Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS18775

Experiment: Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS18770 and RS_RS18775 are separated by 84 nucleotidesRS_RS18775 and RS_RS18780 are separated by 517 nucleotides RS_RS18770: RS_RS18770 - porin, at 443,566 to 444,621 _RS18770 RS_RS18775: RS_RS18775 - DNA-binding response regulator, at 444,706 to 445,386 _RS18775 RS_RS18780: RS_RS18780 - flagellar protein FlgN, at 445,904 to 446,365 _RS18780 Position (kb) 444 445 446Strain fitness (log2 ratio) -3 -2 -1 0 1at 443.743 kb on + strand, within RS_RS18770at 443.744 kb on - strand, within RS_RS18770at 443.744 kb on - strand, within RS_RS18770at 443.875 kb on + strand, within RS_RS18770at 443.876 kb on - strand, within RS_RS18770at 443.876 kb on - strand, within RS_RS18770at 443.935 kb on + strand, within RS_RS18770at 443.935 kb on + strand, within RS_RS18770at 443.935 kb on + strand, within RS_RS18770at 443.935 kb on + strand, within RS_RS18770at 443.936 kb on - strand, within RS_RS18770at 443.936 kb on - strand, within RS_RS18770at 443.936 kb on - strand, within RS_RS18770at 443.936 kb on - strand, within RS_RS18770at 443.936 kb on - strand, within RS_RS18770at 443.977 kb on + strand, within RS_RS18770at 443.977 kb on + strand, within RS_RS18770at 443.977 kb on + strand, within RS_RS18770at 443.978 kb on - strand, within RS_RS18770at 443.978 kb on - strand, within RS_RS18770at 443.978 kb on - strand, within RS_RS18770at 444.007 kb on + strand, within RS_RS18770at 444.008 kb on - strand, within RS_RS18770at 444.008 kb on - strand, within RS_RS18770at 444.008 kb on - strand, within RS_RS18770at 444.085 kb on + strand, within RS_RS18770at 444.085 kb on + strand, within RS_RS18770at 444.086 kb on - strand, within RS_RS18770at 444.086 kb on - strand, within RS_RS18770at 444.127 kb on + strand, within RS_RS18770at 444.128 kb on - strand, within RS_RS18770at 444.128 kb on - strand, within RS_RS18770at 444.128 kb on - strand, within RS_RS18770at 444.188 kb on - strand, within RS_RS18770at 444.188 kb on - strand, within RS_RS18770at 444.188 kb on - strand, within RS_RS18770at 444.313 kb on + strand, within RS_RS18770at 444.313 kb on + strand, within RS_RS18770at 444.314 kb on - strand, within RS_RS18770at 444.347 kb on - strand, within RS_RS18770at 444.347 kb on - strand, within RS_RS18770at 444.551 kb on - strandat 444.619 kb on + strandat 444.619 kb on + strandat 444.740 kb on + strandat 444.741 kb on - strandat 444.741 kb on - strandat 444.855 kb on + strand, within RS_RS18775at 444.855 kb on + strand, within RS_RS18775at 444.855 kb on + strand, within RS_RS18775at 444.944 kb on + strand, within RS_RS18775at 445.011 kb on + strand, within RS_RS18775at 445.028 kb on - strand, within RS_RS18775at 445.042 kb on + strand, within RS_RS18775at 445.042 kb on + strand, within RS_RS18775at 445.046 kb on + strand, within RS_RS18775at 445.046 kb on + strand, within RS_RS18775at 445.046 kb on + strand, within RS_RS18775at 445.047 kb on - strand, within RS_RS18775at 445.047 kb on - strand, within RS_RS18775at 445.047 kb on - strand, within RS_RS18775at 445.064 kb on - strand, within RS_RS18775at 445.064 kb on - strand, within RS_RS18775at 445.066 kb on + strand, within RS_RS18775at 445.067 kb on - strand, within RS_RS18775at 445.100 kb on + strand, within RS_RS18775at 445.100 kb on + strand, within RS_RS18775at 445.100 kb on + strand, within RS_RS18775at 445.115 kb on + strand, within RS_RS18775at 445.115 kb on + strand, within RS_RS18775at 445.116 kb on - strand, within RS_RS18775at 445.125 kb on + strand, within RS_RS18775at 445.185 kb on + strand, within RS_RS18775at 445.185 kb on + strand, within RS_RS18775at 445.186 kb on - strand, within RS_RS18775at 445.186 kb on - strand, within RS_RS18775at 445.186 kb on - strand, within RS_RS18775at 445.186 kb on - strand, within RS_RS18775at 445.186 kb on - strand, within RS_RS18775at 445.186 kb on - strand, within RS_RS18775at 445.230 kb on + strand, within RS_RS18775at 445.440 kb on + strandat 445.440 kb on + strandat 445.440 kb on + strandat 445.440 kb on + strandat 445.440 kb on + strandat 445.441 kb on - strandat 445.441 kb on - strandat 445.479 kb on + strandat 445.480 kb on - strandat 445.480 kb on - strandat 445.545 kb on - strandat 445.723 kb on + strandat 445.766 kb on + strandat 445.770 kb on + strandat 445.771 kb on - strandat 445.906 kb on - strandat 445.962 kb on + strand, within RS_RS18780at 445.962 kb on + strand, within RS_RS18780at 445.962 kb on + strand, within RS_RS18780at 445.963 kb on - strand, within RS_RS18780at 446.133 kb on + strand, within RS_RS18780at 446.134 kb on - strand, within RS_RS18780at 446.352 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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443,743 + RS_RS18770 0.17 -0.7
443,744 - RS_RS18770 0.17 -0.9
443,744 - RS_RS18770 0.17 -0.6
443,875 + RS_RS18770 0.29 -0.9
443,876 - RS_RS18770 0.29 -0.7
443,876 - RS_RS18770 0.29 +0.9
443,935 + RS_RS18770 0.35 +0.4
443,935 + RS_RS18770 0.35 -0.7
443,935 + RS_RS18770 0.35 -0.5
443,935 + RS_RS18770 0.35 -0.8
443,936 - RS_RS18770 0.35 -0.2
443,936 - RS_RS18770 0.35 -0.5
443,936 - RS_RS18770 0.35 +0.4
443,936 - RS_RS18770 0.35 +1.5
443,936 - RS_RS18770 0.35 -1.9
443,977 + RS_RS18770 0.39 -1.2
443,977 + RS_RS18770 0.39 -0.5
443,977 + RS_RS18770 0.39 -1.2
443,978 - RS_RS18770 0.39 -1.2
443,978 - RS_RS18770 0.39 -1.0
443,978 - RS_RS18770 0.39 -1.1
444,007 + RS_RS18770 0.42 -2.6
444,008 - RS_RS18770 0.42 -1.4
444,008 - RS_RS18770 0.42 +1.1
444,008 - RS_RS18770 0.42 +0.9
444,085 + RS_RS18770 0.49 +1.1
444,085 + RS_RS18770 0.49 +0.2
444,086 - RS_RS18770 0.49 -1.3
444,086 - RS_RS18770 0.49 -0.9
444,127 + RS_RS18770 0.53 -1.0
444,128 - RS_RS18770 0.53 -1.8
444,128 - RS_RS18770 0.53 -0.1
444,128 - RS_RS18770 0.53 -0.6
444,188 - RS_RS18770 0.59 -0.4
444,188 - RS_RS18770 0.59 +1.1
444,188 - RS_RS18770 0.59 +0.4
444,313 + RS_RS18770 0.71 -0.4
444,313 + RS_RS18770 0.71 +1.1
444,314 - RS_RS18770 0.71 +1.1
444,347 - RS_RS18770 0.74 +0.1
444,347 - RS_RS18770 0.74 -1.2
444,551 - -1.2
444,619 + -0.7
444,619 + -0.8
444,740 + -1.5
444,741 - -3.0
444,741 - -0.8
444,855 + RS_RS18775 0.22 -0.7
444,855 + RS_RS18775 0.22 -1.0
444,855 + RS_RS18775 0.22 -1.5
444,944 + RS_RS18775 0.35 -1.9
445,011 + RS_RS18775 0.45 -0.3
445,028 - RS_RS18775 0.47 -0.3
445,042 + RS_RS18775 0.49 +0.3
445,042 + RS_RS18775 0.49 -0.9
445,046 + RS_RS18775 0.50 -0.9
445,046 + RS_RS18775 0.50 -1.2
445,046 + RS_RS18775 0.50 -0.9
445,047 - RS_RS18775 0.50 -0.1
445,047 - RS_RS18775 0.50 -0.5
445,047 - RS_RS18775 0.50 -0.3
445,064 - RS_RS18775 0.53 -1.6
445,064 - RS_RS18775 0.53 +0.9
445,066 + RS_RS18775 0.53 -0.6
445,067 - RS_RS18775 0.53 -1.0
445,100 + RS_RS18775 0.58 +1.1
445,100 + RS_RS18775 0.58 -2.9
445,100 + RS_RS18775 0.58 -0.4
445,115 + RS_RS18775 0.60 +0.5
445,115 + RS_RS18775 0.60 -1.8
445,116 - RS_RS18775 0.60 +1.1
445,125 + RS_RS18775 0.62 -0.6
445,185 + RS_RS18775 0.70 -0.2
445,185 + RS_RS18775 0.70 -1.0
445,186 - RS_RS18775 0.70 -1.3
445,186 - RS_RS18775 0.70 -0.1
445,186 - RS_RS18775 0.70 -2.8
445,186 - RS_RS18775 0.70 -0.6
445,186 - RS_RS18775 0.70 -0.2
445,186 - RS_RS18775 0.70 -0.5
445,230 + RS_RS18775 0.77 -0.3
445,440 + -0.6
445,440 + -1.6
445,440 + -1.4
445,440 + +1.1
445,440 + +0.1
445,441 - -1.2
445,441 - -1.0
445,479 + -0.5
445,480 - -0.1
445,480 - +1.4
445,545 - -2.1
445,723 + -1.1
445,766 + -1.9
445,770 + -1.0
445,771 - +0.4
445,906 - -0.9
445,962 + RS_RS18780 0.13 +1.2
445,962 + RS_RS18780 0.13 -0.1
445,962 + RS_RS18780 0.13 +1.1
445,963 - RS_RS18780 0.13 -0.3
446,133 + RS_RS18780 0.50 +1.7
446,134 - RS_RS18780 0.50 +1.2
446,352 - +1.1

Or see this region's nucleotide sequence