Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS18240

Experiment: Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS18235 and RS_RS18240 are separated by 98 nucleotidesRS_RS18240 and RS_RS18245 are separated by 15 nucleotides RS_RS18235: RS_RS18235 - crotonase, at 279,987 to 280,820 _RS18235 RS_RS18240: RS_RS18240 - salicylaldehyde dehydrogenase, at 280,919 to 282,373 _RS18240 RS_RS18245: RS_RS18245 - feruloyl-CoA synthase, at 282,389 to 284,263 _RS18245 Position (kb) 280 281 282 283Strain fitness (log2 ratio) -2 -1 0 1 2 3at 279.996 kb on + strandat 279.997 kb on - strandat 279.997 kb on - strandat 280.210 kb on - strand, within RS_RS18235at 280.299 kb on + strand, within RS_RS18235at 280.299 kb on + strand, within RS_RS18235at 280.299 kb on + strand, within RS_RS18235at 280.300 kb on - strand, within RS_RS18235at 280.300 kb on - strand, within RS_RS18235at 280.494 kb on + strand, within RS_RS18235at 280.494 kb on + strand, within RS_RS18235at 280.494 kb on + strand, within RS_RS18235at 280.494 kb on + strand, within RS_RS18235at 280.494 kb on + strand, within RS_RS18235at 280.495 kb on - strand, within RS_RS18235at 280.638 kb on + strand, within RS_RS18235at 280.639 kb on - strand, within RS_RS18235at 280.639 kb on - strand, within RS_RS18235at 280.695 kb on + strand, within RS_RS18235at 280.695 kb on + strand, within RS_RS18235at 280.696 kb on - strand, within RS_RS18235at 280.696 kb on - strand, within RS_RS18235at 280.701 kb on + strand, within RS_RS18235at 280.807 kb on - strandat 280.807 kb on - strandat 282.047 kb on + strand, within RS_RS18240at 282.134 kb on + strand, within RS_RS18240at 282.218 kb on - strand, within RS_RS18240at 282.623 kb on + strand, within RS_RS18245at 282.623 kb on + strand, within RS_RS18245at 282.623 kb on + strand, within RS_RS18245at 282.624 kb on - strand, within RS_RS18245at 282.755 kb on + strand, within RS_RS18245at 282.755 kb on + strand, within RS_RS18245at 282.755 kb on + strand, within RS_RS18245at 282.755 kb on + strand, within RS_RS18245at 282.755 kb on + strand, within RS_RS18245at 282.756 kb on - strand, within RS_RS18245at 282.756 kb on - strand, within RS_RS18245at 282.756 kb on - strand, within RS_RS18245at 282.756 kb on - strand, within RS_RS18245at 282.756 kb on - strand, within RS_RS18245at 282.756 kb on - strand, within RS_RS18245at 282.756 kb on - strand, within RS_RS18245at 282.771 kb on - strand, within RS_RS18245at 282.812 kb on + strand, within RS_RS18245at 282.812 kb on + strand, within RS_RS18245at 282.813 kb on - strand, within RS_RS18245at 282.827 kb on + strand, within RS_RS18245at 282.860 kb on + strand, within RS_RS18245at 282.860 kb on + strand, within RS_RS18245at 282.861 kb on - strand, within RS_RS18245at 282.861 kb on - strand, within RS_RS18245at 283.232 kb on + strand, within RS_RS18245at 283.232 kb on + strand, within RS_RS18245at 283.233 kb on - strand, within RS_RS18245at 283.233 kb on - strand, within RS_RS18245at 283.247 kb on + strand, within RS_RS18245at 283.250 kb on + strand, within RS_RS18245at 283.250 kb on + strand, within RS_RS18245at 283.251 kb on - strand, within RS_RS18245at 283.251 kb on - strand, within RS_RS18245at 283.328 kb on + strand, within RS_RS18245

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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279,996 + -0.1
279,997 - -1.2
279,997 - +1.4
280,210 - RS_RS18235 0.27 +1.4
280,299 + RS_RS18235 0.37 +0.4
280,299 + RS_RS18235 0.37 +1.2
280,299 + RS_RS18235 0.37 -1.5
280,300 - RS_RS18235 0.38 +0.7
280,300 - RS_RS18235 0.38 -1.5
280,494 + RS_RS18235 0.61 +0.4
280,494 + RS_RS18235 0.61 +1.2
280,494 + RS_RS18235 0.61 +2.8
280,494 + RS_RS18235 0.61 -0.0
280,494 + RS_RS18235 0.61 +2.5
280,495 - RS_RS18235 0.61 +1.2
280,638 + RS_RS18235 0.78 +0.2
280,639 - RS_RS18235 0.78 +0.2
280,639 - RS_RS18235 0.78 +1.2
280,695 + RS_RS18235 0.85 +0.8
280,695 + RS_RS18235 0.85 +1.2
280,696 - RS_RS18235 0.85 -1.5
280,696 - RS_RS18235 0.85 +0.5
280,701 + RS_RS18235 0.86 +0.2
280,807 - +0.3
280,807 - -2.2
282,047 + RS_RS18240 0.78 -0.5
282,134 + RS_RS18240 0.84 -0.4
282,218 - RS_RS18240 0.89 +1.2
282,623 + RS_RS18245 0.12 -0.4
282,623 + RS_RS18245 0.12 +0.2
282,623 + RS_RS18245 0.12 -0.5
282,624 - RS_RS18245 0.13 +2.7
282,755 + RS_RS18245 0.20 -0.2
282,755 + RS_RS18245 0.20 +0.2
282,755 + RS_RS18245 0.20 +1.2
282,755 + RS_RS18245 0.20 -0.7
282,755 + RS_RS18245 0.20 -1.2
282,756 - RS_RS18245 0.20 +1.2
282,756 - RS_RS18245 0.20 +1.2
282,756 - RS_RS18245 0.20 +1.3
282,756 - RS_RS18245 0.20 +1.2
282,756 - RS_RS18245 0.20 -0.5
282,756 - RS_RS18245 0.20 -0.5
282,756 - RS_RS18245 0.20 +0.2
282,771 - RS_RS18245 0.20 +0.2
282,812 + RS_RS18245 0.23 -0.7
282,812 + RS_RS18245 0.23 +0.9
282,813 - RS_RS18245 0.23 +1.2
282,827 + RS_RS18245 0.23 -0.0
282,860 + RS_RS18245 0.25 +1.2
282,860 + RS_RS18245 0.25 -1.2
282,861 - RS_RS18245 0.25 -1.5
282,861 - RS_RS18245 0.25 +1.2
283,232 + RS_RS18245 0.45 -0.4
283,232 + RS_RS18245 0.45 +1.2
283,233 - RS_RS18245 0.45 -1.2
283,233 - RS_RS18245 0.45 -1.1
283,247 + RS_RS18245 0.46 -1.7
283,250 + RS_RS18245 0.46 -0.3
283,250 + RS_RS18245 0.46 -0.4
283,251 - RS_RS18245 0.46 -1.0
283,251 - RS_RS18245 0.46 +1.2
283,328 + RS_RS18245 0.50 -1.3

Or see this region's nucleotide sequence