Experiment: Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS06785 and RS_RS06790 are separated by 27 nucleotides RS_RS06790 and RS_RS06795 overlap by 8 nucleotides RS_RS06795 and RS_RS06800 are separated by 177 nucleotides
RS_RS06785: RS_RS06785 - thiamine pyrophosphate protein, at 1,440,421 to 1,442,166
_RS06785
RS_RS06790: RS_RS06790 - ribonuclease E inhibitor RraA, at 1,442,194 to 1,442,700
_RS06790
RS_RS06795: RS_RS06795 - gamma-glutamylcyclotransferase, at 1,442,693 to 1,443,106
_RS06795
RS_RS06800: RS_RS06800 - GALA protein, at 1,443,284 to 1,445,146
_RS06800
Position (kb) 1442
1443
1444 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1441.906 kb on + strand, within RS_RS06785 at 1441.906 kb on + strand, within RS_RS06785 at 1441.906 kb on + strand, within RS_RS06785 at 1441.906 kb on + strand, within RS_RS06785 at 1441.907 kb on - strand, within RS_RS06785 at 1441.907 kb on - strand, within RS_RS06785 at 1442.626 kb on + strand, within RS_RS06790 at 1442.650 kb on + strand at 1442.650 kb on + strand at 1442.828 kb on + strand, within RS_RS06795 at 1442.828 kb on + strand, within RS_RS06795 at 1442.829 kb on - strand, within RS_RS06795 at 1442.894 kb on + strand, within RS_RS06795 at 1442.945 kb on + strand, within RS_RS06795 at 1443.267 kb on - strand at 1443.267 kb on - strand at 1443.270 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 1,441,906 + RS_RS06785 0.85 +0.1 1,441,906 + RS_RS06785 0.85 +0.9 1,441,906 + RS_RS06785 0.85 -0.6 1,441,906 + RS_RS06785 0.85 -1.3 1,441,907 - RS_RS06785 0.85 -0.4 1,441,907 - RS_RS06785 0.85 +0.9 1,442,626 + RS_RS06790 0.85 -1.6 1,442,650 + -0.4 1,442,650 + -0.6 1,442,828 + RS_RS06795 0.33 -1.6 1,442,828 + RS_RS06795 0.33 -1.1 1,442,829 - RS_RS06795 0.33 +0.9 1,442,894 + RS_RS06795 0.49 -1.0 1,442,945 + RS_RS06795 0.61 -0.4 1,443,267 - +0.9 1,443,267 - -0.7 1,443,270 + -2.8
Or see this region's nucleotide sequence