Experiment: Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS06715 and RS_RS06720 are separated by 11 nucleotides RS_RS06720 and RS_RS06725 are separated by 16 nucleotides RS_RS06725 and RS_RS06730 are separated by 70 nucleotides RS_RS06730 and RS_RS06735 are separated by 39 nucleotides
RS_RS06715: RS_RS06715 - alkanesulfonate monooxygenase, at 1,426,670 to 1,427,833
_RS06715
RS_RS06720: RS_RS06720 - aliphatic sulfonate ABC transporter permease SsuC, at 1,427,845 to 1,428,639
_RS06720
RS_RS06725: RS_RS06725 - aliphatic sulfonate ABC transporter ATP-binding protein, at 1,428,656 to 1,429,510
_RS06725
RS_RS06730: RS_RS06730 - transporter, at 1,429,581 to 1,429,796
_RS06730
RS_RS06735: RS_RS06735 - EAL domain-containing protein, at 1,429,836 to 1,430,741
_RS06735
Position (kb) 1428
1429
1430 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1428.275 kb on - strand, within RS_RS06720 at 1428.286 kb on + strand, within RS_RS06720 at 1428.484 kb on + strand, within RS_RS06720 at 1428.484 kb on + strand, within RS_RS06720 at 1428.547 kb on + strand, within RS_RS06720 at 1429.508 kb on + strand at 1429.568 kb on - strand at 1429.568 kb on - strand at 1429.603 kb on + strand, within RS_RS06730 at 1429.792 kb on + strand at 1429.793 kb on - strand at 1430.150 kb on + strand, within RS_RS06735 at 1430.160 kb on + strand, within RS_RS06735 at 1430.161 kb on - strand, within RS_RS06735 at 1430.161 kb on - strand, within RS_RS06735 at 1430.161 kb on - strand, within RS_RS06735 at 1430.161 kb on - strand, within RS_RS06735 at 1430.355 kb on + strand, within RS_RS06735
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 1,428,275 - RS_RS06720 0.54 -1.4 1,428,286 + RS_RS06720 0.55 +0.9 1,428,484 + RS_RS06720 0.80 +0.9 1,428,484 + RS_RS06720 0.80 +0.9 1,428,547 + RS_RS06720 0.88 +0.9 1,429,508 + +0.9 1,429,568 - -0.3 1,429,568 - -0.5 1,429,603 + RS_RS06730 0.10 -3.7 1,429,792 + -2.1 1,429,793 - -2.1 1,430,150 + RS_RS06735 0.35 -0.6 1,430,160 + RS_RS06735 0.36 -0.7 1,430,161 - RS_RS06735 0.36 +0.0 1,430,161 - RS_RS06735 0.36 +0.3 1,430,161 - RS_RS06735 0.36 +0.9 1,430,161 - RS_RS06735 0.36 -0.1 1,430,355 + RS_RS06735 0.57 +0.9
Or see this region's nucleotide sequence