Experiment: Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS04860 and RS_RS04865 are separated by 111 nucleotides RS_RS04865 and RS_RS04870 are separated by 14 nucleotides RS_RS04870 and RS_RS04875 are separated by 49 nucleotides
RS_RS04860: RS_RS04860 - membrane protein, at 1,033,341 to 1,034,630
_RS04860
RS_RS04865: RS_RS04865 - phytanoyl-CoA dioxygenase family protein, at 1,034,742 to 1,035,404
_RS04865
RS_RS04870: RS_RS04870 - glutathione S-transferase, at 1,035,419 to 1,036,060
_RS04870
RS_RS04875: RS_RS04875 - PLP-dependent aminotransferase family protein, at 1,036,110 to 1,037,300
_RS04875
Position (kb) 1035
1036
1037 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1034.461 kb on + strand, within RS_RS04860 at 1034.743 kb on + strand at 1035.061 kb on - strand, within RS_RS04865 at 1035.064 kb on + strand, within RS_RS04865 at 1035.064 kb on + strand, within RS_RS04865 at 1035.064 kb on + strand, within RS_RS04865 at 1035.065 kb on - strand, within RS_RS04865 at 1035.065 kb on - strand, within RS_RS04865 at 1035.065 kb on - strand, within RS_RS04865 at 1035.376 kb on + strand at 1035.377 kb on - strand at 1035.825 kb on + strand, within RS_RS04870 at 1036.112 kb on - strand at 1036.486 kb on + strand, within RS_RS04875 at 1036.627 kb on + strand, within RS_RS04875 at 1036.682 kb on - strand, within RS_RS04875
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 1,034,461 + RS_RS04860 0.87 +1.1 1,034,743 + +2.7 1,035,061 - RS_RS04865 0.48 -1.2 1,035,064 + RS_RS04865 0.49 -0.6 1,035,064 + RS_RS04865 0.49 -1.7 1,035,064 + RS_RS04865 0.49 -0.4 1,035,065 - RS_RS04865 0.49 +0.1 1,035,065 - RS_RS04865 0.49 +0.5 1,035,065 - RS_RS04865 0.49 -0.8 1,035,376 + +0.1 1,035,377 - +1.4 1,035,825 + RS_RS04870 0.63 -0.4 1,036,112 - -0.1 1,036,486 + RS_RS04875 0.32 -0.1 1,036,627 + RS_RS04875 0.43 +1.1 1,036,682 - RS_RS04875 0.48 -2.3
Or see this region's nucleotide sequence