Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS03105

Experiment: Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS03100 and RS_RS03105 are separated by 402 nucleotidesRS_RS03105 and RS_RS03110 are separated by 21 nucleotidesRS_RS03110 and RS_RS03115 are separated by 64 nucleotides RS_RS03100: RS_RS03100 - recombination-associated protein RdgC, at 664,810 to 665,733 _RS03100 RS_RS03105: RS_RS03105 - cytochrome b/b6 domain-containing protein, at 666,136 to 666,774 _RS03105 RS_RS03110: RS_RS03110 - hypothetical protein, at 666,796 to 667,569 _RS03110 RS_RS03115: RS_RS03115 - pentapeptide MXKDX repeat protein, at 667,634 to 667,897 _RS03115 Position (kb) 666 667Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 665.425 kb on + strand, within RS_RS03100at 665.886 kb on + strandat 665.887 kb on - strandat 665.887 kb on - strandat 665.932 kb on - strandat 666.003 kb on - strandat 666.003 kb on - strandat 666.094 kb on + strandat 666.094 kb on + strandat 666.276 kb on + strand, within RS_RS03105at 666.280 kb on + strand, within RS_RS03105at 666.280 kb on + strand, within RS_RS03105at 666.280 kb on + strand, within RS_RS03105at 666.281 kb on - strand, within RS_RS03105at 666.281 kb on - strand, within RS_RS03105at 666.281 kb on - strand, within RS_RS03105at 666.281 kb on - strand, within RS_RS03105at 666.281 kb on - strand, within RS_RS03105at 666.403 kb on + strand, within RS_RS03105at 666.554 kb on - strand, within RS_RS03105at 666.731 kb on + strandat 666.782 kb on + strandat 667.042 kb on + strand, within RS_RS03110at 667.084 kb on + strand, within RS_RS03110at 667.084 kb on + strand, within RS_RS03110at 667.085 kb on - strand, within RS_RS03110at 667.085 kb on - strand, within RS_RS03110at 667.087 kb on + strand, within RS_RS03110at 667.186 kb on + strand, within RS_RS03110at 667.186 kb on + strand, within RS_RS03110at 667.186 kb on + strand, within RS_RS03110at 667.187 kb on - strand, within RS_RS03110at 667.187 kb on - strand, within RS_RS03110at 667.303 kb on - strand, within RS_RS03110at 667.315 kb on + strand, within RS_RS03110at 667.316 kb on - strand, within RS_RS03110at 667.342 kb on + strand, within RS_RS03110at 667.345 kb on + strand, within RS_RS03110at 667.346 kb on - strand, within RS_RS03110at 667.402 kb on + strand, within RS_RS03110at 667.403 kb on - strand, within RS_RS03110at 667.403 kb on - strand, within RS_RS03110at 667.403 kb on - strand, within RS_RS03110at 667.403 kb on - strand, within RS_RS03110at 667.403 kb on - strand, within RS_RS03110at 667.429 kb on + strand, within RS_RS03110at 667.429 kb on + strand, within RS_RS03110at 667.458 kb on + strand, within RS_RS03110at 667.458 kb on + strand, within RS_RS03110at 667.459 kb on - strand, within RS_RS03110at 667.459 kb on - strand, within RS_RS03110at 667.529 kb on - strandat 667.546 kb on + strandat 667.546 kb on + strandat 667.547 kb on - strandat 667.581 kb on + strandat 667.582 kb on - strandat 667.614 kb on - strandat 667.614 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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665,425 + RS_RS03100 0.67 -1.4
665,886 + -1.4
665,887 - -1.3
665,887 - +1.2
665,932 - +0.1
666,003 - -2.4
666,003 - -1.0
666,094 + +0.8
666,094 + -0.2
666,276 + RS_RS03105 0.22 -1.0
666,280 + RS_RS03105 0.23 +0.2
666,280 + RS_RS03105 0.23 -0.3
666,280 + RS_RS03105 0.23 +1.2
666,281 - RS_RS03105 0.23 +1.2
666,281 - RS_RS03105 0.23 -0.3
666,281 - RS_RS03105 0.23 +1.2
666,281 - RS_RS03105 0.23 +1.2
666,281 - RS_RS03105 0.23 +1.1
666,403 + RS_RS03105 0.42 -0.2
666,554 - RS_RS03105 0.65 -3.2
666,731 + -0.7
666,782 + +0.1
667,042 + RS_RS03110 0.32 +1.2
667,084 + RS_RS03110 0.37 -1.3
667,084 + RS_RS03110 0.37 -1.3
667,085 - RS_RS03110 0.37 +0.9
667,085 - RS_RS03110 0.37 +2.2
667,087 + RS_RS03110 0.38 -0.3
667,186 + RS_RS03110 0.50 -0.6
667,186 + RS_RS03110 0.50 +1.2
667,186 + RS_RS03110 0.50 +0.2
667,187 - RS_RS03110 0.51 +1.1
667,187 - RS_RS03110 0.51 +1.2
667,303 - RS_RS03110 0.66 -0.8
667,315 + RS_RS03110 0.67 -0.3
667,316 - RS_RS03110 0.67 +1.2
667,342 + RS_RS03110 0.71 -2.3
667,345 + RS_RS03110 0.71 -0.4
667,346 - RS_RS03110 0.71 -1.0
667,402 + RS_RS03110 0.78 -0.6
667,403 - RS_RS03110 0.78 -0.4
667,403 - RS_RS03110 0.78 -1.9
667,403 - RS_RS03110 0.78 -0.4
667,403 - RS_RS03110 0.78 +1.2
667,403 - RS_RS03110 0.78 -0.6
667,429 + RS_RS03110 0.82 -0.4
667,429 + RS_RS03110 0.82 -0.8
667,458 + RS_RS03110 0.86 +0.2
667,458 + RS_RS03110 0.86 +0.6
667,459 - RS_RS03110 0.86 +4.0
667,459 - RS_RS03110 0.86 +0.2
667,529 - +1.2
667,546 + -0.7
667,546 + -0.2
667,547 - +0.3
667,581 + -0.7
667,582 - +1.2
667,614 - +4.5
667,614 - -0.2

Or see this region's nucleotide sequence