Experiment: Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS03085 and RS_RS03090 are separated by 323 nucleotides RS_RS03090 and RS_RS03095 are separated by 205 nucleotides
RS_RS03085: RS_RS03085 - LysR family transcriptional regulator, at 662,013 to 662,882
_RS03085
RS_RS03090: RS_RS03090 - hypothetical protein, at 663,206 to 663,718
_RS03090
RS_RS03095: RS_RS03095 - hypothetical protein, at 663,924 to 664,280
_RS03095
Position (kb) 663
664 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 662.322 kb on + strand, within RS_RS03085 at 662.334 kb on + strand, within RS_RS03085 at 662.569 kb on - strand, within RS_RS03085 at 662.632 kb on - strand, within RS_RS03085 at 662.644 kb on - strand, within RS_RS03085 at 663.035 kb on + strand at 663.036 kb on - strand at 663.309 kb on + strand, within RS_RS03090 at 663.310 kb on - strand, within RS_RS03090 at 663.310 kb on - strand, within RS_RS03090 at 663.496 kb on - strand, within RS_RS03090 at 663.510 kb on + strand, within RS_RS03090 at 663.564 kb on + strand, within RS_RS03090 at 663.564 kb on + strand, within RS_RS03090 at 663.565 kb on - strand, within RS_RS03090 at 663.926 kb on - strand at 663.941 kb on - strand at 663.953 kb on - strand at 664.099 kb on + strand, within RS_RS03095 at 664.099 kb on + strand, within RS_RS03095 at 664.262 kb on + strand at 664.399 kb on - strand at 664.408 kb on + strand at 664.453 kb on - strand at 664.480 kb on + strand at 664.480 kb on + strand at 664.614 kb on - strand at 664.619 kb on + strand at 664.619 kb on + strand at 664.620 kb on - strand at 664.620 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 662,322 + RS_RS03085 0.36 -0.6 662,334 + RS_RS03085 0.37 +1.2 662,569 - RS_RS03085 0.64 +1.2 662,632 - RS_RS03085 0.71 -0.4 662,644 - RS_RS03085 0.73 -0.4 663,035 + +1.2 663,036 - -0.2 663,309 + RS_RS03090 0.20 +0.4 663,310 - RS_RS03090 0.20 -0.6 663,310 - RS_RS03090 0.20 -1.5 663,496 - RS_RS03090 0.57 -1.4 663,510 + RS_RS03090 0.59 -0.3 663,564 + RS_RS03090 0.70 +0.1 663,564 + RS_RS03090 0.70 -0.4 663,565 - RS_RS03090 0.70 -0.9 663,926 - -2.4 663,941 - +1.2 663,953 - +1.2 664,099 + RS_RS03095 0.49 -1.5 664,099 + RS_RS03095 0.49 -0.4 664,262 + +1.2 664,399 - -2.3 664,408 + -1.3 664,453 - +0.3 664,480 + +1.2 664,480 + -0.4 664,614 - +3.5 664,619 + +1.2 664,619 + +1.2 664,620 - -0.4 664,620 - +1.2
Or see this region's nucleotide sequence