Experiment: Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS03035 and RS_RS03040 are separated by 23 nucleotides RS_RS03040 and RS_RS03045 are separated by 101 nucleotides RS_RS03045 and RS_RS03050 are separated by 364 nucleotides
RS_RS03035: RS_RS03035 - methyl-accepting chemotaxis protein, at 652,711 to 654,513
_RS03035
RS_RS03040: RS_RS03040 - glutathione S-transferase family protein, at 654,537 to 655,178
_RS03040
RS_RS03045: RS_RS03045 - hypothetical protein, at 655,280 to 655,526
_RS03045
RS_RS03050: RS_RS03050 - hypothetical protein, at 655,891 to 656,583
_RS03050
Position (kb) 654
655
656 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 654.628 kb on + strand, within RS_RS03040 at 654.628 kb on + strand, within RS_RS03040 at 654.734 kb on - strand, within RS_RS03040 at 654.865 kb on + strand, within RS_RS03040 at 654.865 kb on + strand, within RS_RS03040 at 654.886 kb on + strand, within RS_RS03040 at 654.887 kb on - strand, within RS_RS03040 at 654.937 kb on + strand, within RS_RS03040 at 654.938 kb on - strand, within RS_RS03040 at 654.938 kb on - strand, within RS_RS03040 at 654.952 kb on + strand, within RS_RS03040 at 654.953 kb on - strand, within RS_RS03040 at 654.958 kb on + strand, within RS_RS03040 at 654.985 kb on - strand, within RS_RS03040 at 655.036 kb on + strand, within RS_RS03040 at 655.102 kb on - strand, within RS_RS03040 at 655.151 kb on - strand at 655.151 kb on - strand at 655.212 kb on + strand at 655.212 kb on + strand at 655.213 kb on - strand at 655.213 kb on - strand at 655.213 kb on - strand at 655.655 kb on - strand at 655.868 kb on + strand at 655.868 kb on + strand at 655.868 kb on + strand at 656.098 kb on + strand, within RS_RS03050 at 656.099 kb on - strand, within RS_RS03050 at 656.099 kb on - strand, within RS_RS03050
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 654,628 + RS_RS03040 0.14 +1.2 654,628 + RS_RS03040 0.14 +0.1 654,734 - RS_RS03040 0.31 +0.3 654,865 + RS_RS03040 0.51 -1.7 654,865 + RS_RS03040 0.51 -0.4 654,886 + RS_RS03040 0.54 -1.0 654,887 - RS_RS03040 0.55 -0.4 654,937 + RS_RS03040 0.62 +1.2 654,938 - RS_RS03040 0.62 -0.4 654,938 - RS_RS03040 0.62 -2.2 654,952 + RS_RS03040 0.65 -0.1 654,953 - RS_RS03040 0.65 -0.9 654,958 + RS_RS03040 0.66 -1.8 654,985 - RS_RS03040 0.70 -0.8 655,036 + RS_RS03040 0.78 -0.9 655,102 - RS_RS03040 0.88 -2.9 655,151 - +2.4 655,151 - -1.4 655,212 + -1.0 655,212 + -0.9 655,213 - +2.3 655,213 - +0.6 655,213 - +1.9 655,655 - -0.7 655,868 + -0.4 655,868 + +0.3 655,868 + +1.2 656,098 + RS_RS03050 0.30 +1.2 656,099 - RS_RS03050 0.30 +1.2 656,099 - RS_RS03050 0.30 +0.6
Or see this region's nucleotide sequence