Experiment: Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02195 and RS_RS02200 are separated by 133 nucleotides RS_RS02200 and RS_RS02205 are separated by 21 nucleotides RS_RS02205 and RS_RS02210 are separated by 25 nucleotides RS_RS02210 and RS_RS02215 are separated by 16 nucleotides
RS_RS02195: RS_RS02195 - hypothetical protein, at 471,350 to 472,630
_RS02195
RS_RS02200: RS_RS02200 - hypothetical protein, at 472,764 to 473,192
_RS02200
RS_RS02205: RS_RS02205 - peptidase C39, at 473,214 to 473,918
_RS02205
RS_RS02210: RS_RS02210 - hypothetical protein, at 473,944 to 474,507
_RS02210
RS_RS02215: RS_RS02215 - acetate kinase, at 474,524 to 475,864
_RS02215
Position (kb) 473
474 Strain fitness (log2 ratio) -2
-1
0
1 at 472.628 kb on + strand at 472.998 kb on + strand, within RS_RS02200 at 473.437 kb on - strand, within RS_RS02205 at 473.484 kb on + strand, within RS_RS02205 at 474.077 kb on + strand, within RS_RS02210 at 474.077 kb on + strand, within RS_RS02210 at 474.078 kb on - strand, within RS_RS02210 at 474.078 kb on - strand, within RS_RS02210 at 474.078 kb on - strand, within RS_RS02210 at 474.187 kb on + strand, within RS_RS02210 at 474.526 kb on - strand at 474.526 kb on - strand at 474.627 kb on + strand at 474.913 kb on - strand, within RS_RS02215
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 472,628 + +1.3 472,998 + RS_RS02200 0.55 -0.5 473,437 - RS_RS02205 0.32 -0.2 473,484 + RS_RS02205 0.38 +1.3 474,077 + RS_RS02210 0.24 -2.3 474,077 + RS_RS02210 0.24 +0.1 474,078 - RS_RS02210 0.24 -0.3 474,078 - RS_RS02210 0.24 -1.7 474,078 - RS_RS02210 0.24 +0.5 474,187 + RS_RS02210 0.43 -0.9 474,526 - -0.6 474,526 - -0.3 474,627 + -0.3 474,913 - RS_RS02215 0.29 +1.1
Or see this region's nucleotide sequence