Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS02120

Experiment: Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS02115 and RS_RS02120 are separated by 83 nucleotidesRS_RS02120 and RS_RS02125 overlap by 4 nucleotides RS_RS02115: RS_RS02115 - beta-ketoacyl-[acyl-carrier-protein] synthase II, at 453,907 to 455,124 _RS02115 RS_RS02120: RS_RS02120 - polysaccharide deacetylase family protein, at 455,208 to 456,071 _RS02120 RS_RS02125: RS_RS02125 - membrane protein, at 456,068 to 458,551 _RS02125 Position (kb) 455 456 457Strain fitness (log2 ratio) -2 -1 0 1 2at 454.259 kb on + strand, within RS_RS02115at 454.259 kb on + strand, within RS_RS02115at 454.259 kb on + strand, within RS_RS02115at 454.260 kb on - strand, within RS_RS02115at 455.307 kb on + strand, within RS_RS02120at 456.555 kb on + strand, within RS_RS02125at 456.555 kb on + strand, within RS_RS02125at 456.555 kb on + strand, within RS_RS02125at 456.556 kb on - strand, within RS_RS02125at 456.556 kb on - strand, within RS_RS02125at 456.556 kb on - strand, within RS_RS02125at 456.564 kb on + strand, within RS_RS02125at 456.565 kb on - strand, within RS_RS02125

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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454,259 + RS_RS02115 0.29 +0.6
454,259 + RS_RS02115 0.29 -2.0
454,259 + RS_RS02115 0.29 -0.4
454,260 - RS_RS02115 0.29 +1.4
455,307 + RS_RS02120 0.11 -0.4
456,555 + RS_RS02125 0.20 -0.5
456,555 + RS_RS02125 0.20 +1.4
456,555 + RS_RS02125 0.20 +2.4
456,556 - RS_RS02125 0.20 -0.6
456,556 - RS_RS02125 0.20 -0.2
456,556 - RS_RS02125 0.20 -1.2
456,564 + RS_RS02125 0.20 -0.7
456,565 - RS_RS02125 0.20 +0.6

Or see this region's nucleotide sequence