Experiment: Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS01570 and RS_RS01575 are separated by 237 nucleotides RS_RS01575 and RS_RS01580 are separated by 151 nucleotides RS_RS01580 and RS_RS01585 are separated by 217 nucleotides
RS_RS01570: RS_RS01570 - phospholipase C, phosphocholine-specific, at 349,719 to 351,821
_RS01570
RS_RS01575: RS_RS01575 - hypothetical protein, at 352,059 to 352,373
_RS01575
RS_RS01580: RS_RS01580 - type III secretion system YopJ family effector RipAE, at 352,525 to 354,456
_RS01580
RS_RS01585: RS_RS01585 - lipoyl synthase, at 354,674 to 355,675
_RS01585
Position (kb) 352
353
354
355 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 351.550 kb on - strand, within RS_RS01570 at 351.630 kb on + strand at 351.630 kb on + strand at 351.631 kb on - strand at 351.794 kb on + strand at 351.794 kb on + strand at 351.839 kb on + strand at 351.839 kb on + strand at 351.971 kb on + strand at 351.999 kb on + strand at 352.094 kb on + strand, within RS_RS01575 at 352.218 kb on + strand, within RS_RS01575 at 352.248 kb on + strand, within RS_RS01575 at 352.249 kb on - strand, within RS_RS01575 at 352.249 kb on - strand, within RS_RS01575 at 352.249 kb on - strand, within RS_RS01575 at 352.311 kb on - strand, within RS_RS01575 at 352.314 kb on + strand, within RS_RS01575 at 352.315 kb on - strand, within RS_RS01575 at 352.315 kb on - strand, within RS_RS01575 at 352.320 kb on + strand, within RS_RS01575 at 352.320 kb on + strand, within RS_RS01575 at 352.320 kb on + strand, within RS_RS01575 at 352.320 kb on + strand, within RS_RS01575 at 352.583 kb on + strand at 352.583 kb on + strand at 352.584 kb on - strand at 352.584 kb on - strand at 352.584 kb on - strand at 352.584 kb on - strand at 352.584 kb on - strand at 352.625 kb on + strand at 352.626 kb on - strand at 352.626 kb on - strand at 352.682 kb on + strand at 352.683 kb on - strand at 352.827 kb on + strand, within RS_RS01580 at 352.853 kb on + strand, within RS_RS01580 at 352.853 kb on + strand, within RS_RS01580 at 352.853 kb on + strand, within RS_RS01580 at 352.854 kb on - strand, within RS_RS01580 at 352.854 kb on - strand, within RS_RS01580 at 352.854 kb on - strand, within RS_RS01580 at 352.854 kb on - strand, within RS_RS01580 at 353.269 kb on + strand, within RS_RS01580 at 353.270 kb on - strand, within RS_RS01580 at 353.336 kb on + strand, within RS_RS01580 at 353.360 kb on + strand, within RS_RS01580 at 353.361 kb on - strand, within RS_RS01580 at 353.705 kb on - strand, within RS_RS01580 at 353.769 kb on + strand, within RS_RS01580 at 353.770 kb on - strand, within RS_RS01580 at 354.171 kb on - strand, within RS_RS01580 at 354.441 kb on + strand at 354.470 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 351,550 - RS_RS01570 0.87 -0.6 351,630 + +0.4 351,630 + -1.3 351,631 - -0.5 351,794 + -1.4 351,794 + -2.4 351,839 + +3.2 351,839 + -1.1 351,971 + -0.6 351,999 + +1.4 352,094 + RS_RS01575 0.11 -0.4 352,218 + RS_RS01575 0.50 -0.4 352,248 + RS_RS01575 0.60 +1.4 352,249 - RS_RS01575 0.60 +1.4 352,249 - RS_RS01575 0.60 -0.2 352,249 - RS_RS01575 0.60 -0.9 352,311 - RS_RS01575 0.80 +2.4 352,314 + RS_RS01575 0.81 -0.9 352,315 - RS_RS01575 0.81 +1.8 352,315 - RS_RS01575 0.81 -1.0 352,320 + RS_RS01575 0.83 +1.4 352,320 + RS_RS01575 0.83 +1.2 352,320 + RS_RS01575 0.83 +1.4 352,320 + RS_RS01575 0.83 -1.2 352,583 + +0.4 352,583 + -2.6 352,584 - -1.0 352,584 - -1.0 352,584 - -0.1 352,584 - -0.2 352,584 - -1.1 352,625 + +0.6 352,626 - +1.4 352,626 - +0.4 352,682 + -0.0 352,683 - -1.1 352,827 + RS_RS01580 0.16 -2.0 352,853 + RS_RS01580 0.17 +1.4 352,853 + RS_RS01580 0.17 -0.3 352,853 + RS_RS01580 0.17 -1.7 352,854 - RS_RS01580 0.17 -0.7 352,854 - RS_RS01580 0.17 +0.0 352,854 - RS_RS01580 0.17 -0.2 352,854 - RS_RS01580 0.17 -2.0 353,269 + RS_RS01580 0.39 +0.4 353,270 - RS_RS01580 0.39 +1.4 353,336 + RS_RS01580 0.42 +0.4 353,360 + RS_RS01580 0.43 +1.4 353,361 - RS_RS01580 0.43 +0.4 353,705 - RS_RS01580 0.61 +0.4 353,769 + RS_RS01580 0.64 -1.2 353,770 - RS_RS01580 0.64 +1.4 354,171 - RS_RS01580 0.85 +0.4 354,441 + +0.0 354,470 - -1.7
Or see this region's nucleotide sequence