Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS01145

Experiment: Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS01140 and RS_RS01145 are separated by 156 nucleotidesRS_RS01145 and RS_RS01150 are separated by 126 nucleotides RS_RS01140: RS_RS01140 - hypothetical protein, at 254,360 to 255,166 _RS01140 RS_RS01145: RS_RS01145 - EamA/RhaT family transporter, at 255,323 to 256,303 _RS01145 RS_RS01150: RS_RS01150 - AraC family transcriptional regulator, at 256,430 to 257,176 _RS01150 Position (kb) 255 256 257Strain fitness (log2 ratio) -3 -2 -1 0 1at 254.359 kb on + strandat 254.359 kb on + strandat 254.378 kb on - strandat 254.532 kb on - strand, within RS_RS01140at 254.618 kb on - strand, within RS_RS01140at 254.671 kb on + strand, within RS_RS01140at 254.671 kb on + strand, within RS_RS01140at 254.924 kb on + strand, within RS_RS01140at 254.924 kb on + strand, within RS_RS01140at 254.925 kb on - strand, within RS_RS01140at 254.927 kb on + strand, within RS_RS01140at 254.927 kb on + strand, within RS_RS01140at 254.987 kb on + strand, within RS_RS01140at 254.988 kb on - strand, within RS_RS01140at 254.988 kb on - strand, within RS_RS01140at 254.988 kb on - strand, within RS_RS01140at 255.008 kb on + strand, within RS_RS01140at 255.008 kb on + strand, within RS_RS01140at 255.009 kb on - strand, within RS_RS01140at 255.034 kb on + strand, within RS_RS01140at 255.034 kb on + strand, within RS_RS01140at 255.034 kb on + strand, within RS_RS01140at 255.034 kb on + strand, within RS_RS01140at 255.038 kb on + strand, within RS_RS01140at 255.038 kb on + strand, within RS_RS01140at 255.039 kb on - strand, within RS_RS01140at 255.039 kb on - strand, within RS_RS01140at 255.039 kb on - strand, within RS_RS01140at 255.163 kb on + strandat 255.164 kb on + strandat 255.164 kb on + strandat 255.164 kb on + strandat 255.165 kb on - strandat 255.165 kb on - strandat 255.165 kb on - strandat 255.424 kb on - strand, within RS_RS01145at 255.424 kb on - strand, within RS_RS01145at 255.733 kb on - strand, within RS_RS01145at 255.733 kb on - strand, within RS_RS01145at 255.829 kb on - strand, within RS_RS01145at 255.829 kb on - strand, within RS_RS01145at 255.999 kb on + strand, within RS_RS01145at 256.000 kb on - strand, within RS_RS01145at 256.002 kb on + strand, within RS_RS01145at 256.002 kb on + strand, within RS_RS01145at 256.002 kb on + strand, within RS_RS01145at 256.003 kb on - strand, within RS_RS01145at 256.003 kb on - strand, within RS_RS01145at 256.116 kb on + strand, within RS_RS01145at 256.116 kb on + strand, within RS_RS01145at 256.116 kb on + strand, within RS_RS01145at 256.125 kb on + strand, within RS_RS01145at 256.125 kb on + strand, within RS_RS01145at 256.125 kb on + strand, within RS_RS01145at 256.507 kb on - strand, within RS_RS01150at 256.510 kb on - strand, within RS_RS01150at 256.510 kb on - strand, within RS_RS01150at 256.701 kb on + strand, within RS_RS01150at 256.701 kb on + strand, within RS_RS01150at 256.752 kb on - strand, within RS_RS01150at 256.752 kb on - strand, within RS_RS01150at 256.752 kb on - strand, within RS_RS01150at 257.158 kb on - strandat 257.189 kb on + strandat 257.189 kb on + strandat 257.189 kb on + strandat 257.190 kb on - strandat 257.190 kb on - strandat 257.190 kb on - strandat 257.190 kb on - strandat 257.263 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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254,359 + +1.4
254,359 + -0.8
254,378 - -2.2
254,532 - RS_RS01140 0.21 +1.1
254,618 - RS_RS01140 0.32 -0.2
254,671 + RS_RS01140 0.39 -0.7
254,671 + RS_RS01140 0.39 -2.1
254,924 + RS_RS01140 0.70 +0.7
254,924 + RS_RS01140 0.70 +1.7
254,925 - RS_RS01140 0.70 -0.2
254,927 + RS_RS01140 0.70 -0.4
254,927 + RS_RS01140 0.70 -1.0
254,987 + RS_RS01140 0.78 +1.4
254,988 - RS_RS01140 0.78 -0.9
254,988 - RS_RS01140 0.78 +1.4
254,988 - RS_RS01140 0.78 +1.4
255,008 + RS_RS01140 0.80 -0.0
255,008 + RS_RS01140 0.80 -3.3
255,009 - RS_RS01140 0.80 +1.4
255,034 + RS_RS01140 0.84 +1.4
255,034 + RS_RS01140 0.84 -0.9
255,034 + RS_RS01140 0.84 -1.0
255,034 + RS_RS01140 0.84 -0.4
255,038 + RS_RS01140 0.84 +0.4
255,038 + RS_RS01140 0.84 -0.5
255,039 - RS_RS01140 0.84 -0.7
255,039 - RS_RS01140 0.84 +1.4
255,039 - RS_RS01140 0.84 -0.9
255,163 + +1.4
255,164 + -1.1
255,164 + -1.9
255,164 + +1.4
255,165 - +1.4
255,165 - +0.4
255,165 - +1.4
255,424 - RS_RS01145 0.10 +1.4
255,424 - RS_RS01145 0.10 +1.4
255,733 - RS_RS01145 0.42 +0.5
255,733 - RS_RS01145 0.42 -0.6
255,829 - RS_RS01145 0.52 -0.2
255,829 - RS_RS01145 0.52 -1.4
255,999 + RS_RS01145 0.69 -0.6
256,000 - RS_RS01145 0.69 +1.4
256,002 + RS_RS01145 0.69 +0.5
256,002 + RS_RS01145 0.69 -0.3
256,002 + RS_RS01145 0.69 -0.2
256,003 - RS_RS01145 0.69 +0.2
256,003 - RS_RS01145 0.69 +1.4
256,116 + RS_RS01145 0.81 -0.2
256,116 + RS_RS01145 0.81 -1.2
256,116 + RS_RS01145 0.81 -0.6
256,125 + RS_RS01145 0.82 -1.5
256,125 + RS_RS01145 0.82 -0.1
256,125 + RS_RS01145 0.82 -0.7
256,507 - RS_RS01150 0.10 +0.1
256,510 - RS_RS01150 0.11 -0.3
256,510 - RS_RS01150 0.11 -0.2
256,701 + RS_RS01150 0.36 -2.5
256,701 + RS_RS01150 0.36 -2.1
256,752 - RS_RS01150 0.43 -0.6
256,752 - RS_RS01150 0.43 -2.6
256,752 - RS_RS01150 0.43 +1.4
257,158 - -0.9
257,189 + -0.3
257,189 + -2.3
257,189 + -0.7
257,190 - -1.3
257,190 - +0.2
257,190 - +0.1
257,190 - +1.4
257,263 - -0.2

Or see this region's nucleotide sequence