Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS22645

Experiment: Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS22635 and RS_RS22640 are separated by 257 nucleotidesRS_RS22640 and RS_RS22645 overlap by 4 nucleotidesRS_RS22645 and RS_RS22650 are separated by 43 nucleotides RS_RS22635: RS_RS22635 - glutaminase, at 1,443,367 to 1,444,281 _RS22635 RS_RS22640: RS_RS22640 - molybdate ABC transporter permease subunit, at 1,444,539 to 1,445,225 _RS22640 RS_RS22645: RS_RS22645 - ABC transporter ATP-binding protein, at 1,445,222 to 1,445,959 _RS22645 RS_RS22650: RS_RS22650 - LysR family transcriptional regulator, at 1,446,003 to 1,446,899 _RS22650 Position (kb) 1445 1446Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1444.422 kb on + strandat 1444.423 kb on - strandat 1444.460 kb on + strandat 1444.471 kb on - strandat 1444.473 kb on - strandat 1444.632 kb on + strand, within RS_RS22640at 1444.633 kb on - strand, within RS_RS22640at 1444.633 kb on - strand, within RS_RS22640at 1444.723 kb on - strand, within RS_RS22640at 1444.726 kb on - strand, within RS_RS22640at 1444.726 kb on - strand, within RS_RS22640at 1444.726 kb on - strand, within RS_RS22640at 1444.799 kb on + strand, within RS_RS22640at 1444.799 kb on + strand, within RS_RS22640at 1444.800 kb on - strand, within RS_RS22640at 1445.085 kb on + strand, within RS_RS22640at 1445.085 kb on + strand, within RS_RS22640at 1445.085 kb on + strand, within RS_RS22640at 1445.086 kb on - strand, within RS_RS22640at 1445.321 kb on + strand, within RS_RS22645at 1445.321 kb on + strand, within RS_RS22645at 1445.487 kb on - strand, within RS_RS22645at 1445.487 kb on - strand, within RS_RS22645at 1445.631 kb on - strand, within RS_RS22645at 1445.925 kb on - strandat 1446.090 kb on + strandat 1446.090 kb on + strandat 1446.319 kb on + strand, within RS_RS22650at 1446.484 kb on + strand, within RS_RS22650at 1446.484 kb on + strand, within RS_RS22650at 1446.485 kb on - strand, within RS_RS22650at 1446.559 kb on + strand, within RS_RS22650at 1446.559 kb on + strand, within RS_RS22650at 1446.559 kb on + strand, within RS_RS22650at 1446.560 kb on - strand, within RS_RS22650at 1446.560 kb on - strand, within RS_RS22650at 1446.703 kb on + strand, within RS_RS22650at 1446.703 kb on + strand, within RS_RS22650at 1446.704 kb on - strand, within RS_RS22650at 1446.704 kb on - strand, within RS_RS22650at 1446.907 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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1,444,422 + +0.8
1,444,423 - -0.8
1,444,460 + +0.1
1,444,471 - +0.8
1,444,473 - +0.8
1,444,632 + RS_RS22640 0.14 -0.2
1,444,633 - RS_RS22640 0.14 +0.8
1,444,633 - RS_RS22640 0.14 -0.4
1,444,723 - RS_RS22640 0.27 -3.0
1,444,726 - RS_RS22640 0.27 -1.5
1,444,726 - RS_RS22640 0.27 -1.2
1,444,726 - RS_RS22640 0.27 +0.8
1,444,799 + RS_RS22640 0.38 -1.4
1,444,799 + RS_RS22640 0.38 -1.5
1,444,800 - RS_RS22640 0.38 +0.4
1,445,085 + RS_RS22640 0.79 -1.8
1,445,085 + RS_RS22640 0.79 +0.8
1,445,085 + RS_RS22640 0.79 +0.8
1,445,086 - RS_RS22640 0.80 -0.8
1,445,321 + RS_RS22645 0.13 +0.8
1,445,321 + RS_RS22645 0.13 -1.0
1,445,487 - RS_RS22645 0.36 +0.8
1,445,487 - RS_RS22645 0.36 +0.8
1,445,631 - RS_RS22645 0.55 +1.8
1,445,925 - +0.1
1,446,090 + +0.8
1,446,090 + +0.8
1,446,319 + RS_RS22650 0.35 -0.2
1,446,484 + RS_RS22650 0.54 -2.4
1,446,484 + RS_RS22650 0.54 -0.8
1,446,485 - RS_RS22650 0.54 -0.3
1,446,559 + RS_RS22650 0.62 +0.3
1,446,559 + RS_RS22650 0.62 -1.2
1,446,559 + RS_RS22650 0.62 -0.5
1,446,560 - RS_RS22650 0.62 +0.8
1,446,560 - RS_RS22650 0.62 -2.3
1,446,703 + RS_RS22650 0.78 -0.6
1,446,703 + RS_RS22650 0.78 -1.2
1,446,704 - RS_RS22650 0.78 +0.8
1,446,704 - RS_RS22650 0.78 -0.6
1,446,907 - +1.1

Or see this region's nucleotide sequence