Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS20065

Experiment: Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS20060 and RS_RS20065 overlap by 4 nucleotidesRS_RS20065 and RS_RS20070 are separated by 31 nucleotides RS_RS20060: RS_RS20060 - cobyrinate a,c-diamide synthase, at 746,394 to 747,716 _RS20060 RS_RS20065: RS_RS20065 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 747,713 to 748,315 _RS20065 RS_RS20070: RS_RS20070 - GTP-binding protein, at 748,347 to 749,450 _RS20070 Position (kb) 747 748 749Strain fitness (log2 ratio) -2 -1 0 1 2at 746.719 kb on + strand, within RS_RS20060at 746.720 kb on - strand, within RS_RS20060at 746.743 kb on + strand, within RS_RS20060at 746.845 kb on + strand, within RS_RS20060at 746.845 kb on + strand, within RS_RS20060at 746.846 kb on - strand, within RS_RS20060at 746.846 kb on - strand, within RS_RS20060at 746.941 kb on + strand, within RS_RS20060at 746.941 kb on + strand, within RS_RS20060at 747.460 kb on + strand, within RS_RS20060at 747.542 kb on + strand, within RS_RS20060at 747.542 kb on + strand, within RS_RS20060at 747.544 kb on + strand, within RS_RS20060at 747.544 kb on + strand, within RS_RS20060at 747.544 kb on + strand, within RS_RS20060at 747.544 kb on + strand, within RS_RS20060at 747.544 kb on + strand, within RS_RS20060at 747.544 kb on + strand, within RS_RS20060at 747.545 kb on - strand, within RS_RS20060at 747.556 kb on + strand, within RS_RS20060at 747.557 kb on - strand, within RS_RS20060at 747.897 kb on + strand, within RS_RS20065at 747.898 kb on - strand, within RS_RS20065at 747.903 kb on + strand, within RS_RS20065at 747.903 kb on + strand, within RS_RS20065at 747.903 kb on + strand, within RS_RS20065at 747.903 kb on + strand, within RS_RS20065at 747.903 kb on + strand, within RS_RS20065at 747.904 kb on - strand, within RS_RS20065at 747.904 kb on - strand, within RS_RS20065at 747.916 kb on + strand, within RS_RS20065at 747.917 kb on - strand, within RS_RS20065at 748.035 kb on + strand, within RS_RS20065at 748.035 kb on + strand, within RS_RS20065at 748.035 kb on + strand, within RS_RS20065at 748.036 kb on - strand, within RS_RS20065at 748.036 kb on - strand, within RS_RS20065at 748.775 kb on - strand, within RS_RS20070at 748.775 kb on - strand, within RS_RS20070at 749.236 kb on + strand, within RS_RS20070

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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746,719 + RS_RS20060 0.25 -0.5
746,720 - RS_RS20060 0.25 -2.0
746,743 + RS_RS20060 0.26 -0.8
746,845 + RS_RS20060 0.34 +0.8
746,845 + RS_RS20060 0.34 -1.7
746,846 - RS_RS20060 0.34 +0.8
746,846 - RS_RS20060 0.34 +0.2
746,941 + RS_RS20060 0.41 -1.4
746,941 + RS_RS20060 0.41 +0.8
747,460 + RS_RS20060 0.81 -0.7
747,542 + RS_RS20060 0.87 +0.8
747,542 + RS_RS20060 0.87 -1.3
747,544 + RS_RS20060 0.87 +0.8
747,544 + RS_RS20060 0.87 -1.2
747,544 + RS_RS20060 0.87 -0.3
747,544 + RS_RS20060 0.87 -0.5
747,544 + RS_RS20060 0.87 +0.8
747,544 + RS_RS20060 0.87 +0.8
747,545 - RS_RS20060 0.87 -1.8
747,556 + RS_RS20060 0.88 -0.2
747,557 - RS_RS20060 0.88 -0.8
747,897 + RS_RS20065 0.31 -1.7
747,898 - RS_RS20065 0.31 -0.8
747,903 + RS_RS20065 0.32 -0.1
747,903 + RS_RS20065 0.32 +0.8
747,903 + RS_RS20065 0.32 +0.8
747,903 + RS_RS20065 0.32 -0.8
747,903 + RS_RS20065 0.32 -2.0
747,904 - RS_RS20065 0.32 -0.7
747,904 - RS_RS20065 0.32 +0.8
747,916 + RS_RS20065 0.34 +2.4
747,917 - RS_RS20065 0.34 +0.8
748,035 + RS_RS20065 0.53 +0.1
748,035 + RS_RS20065 0.53 +0.8
748,035 + RS_RS20065 0.53 -1.7
748,036 - RS_RS20065 0.54 -0.2
748,036 - RS_RS20065 0.54 -1.8
748,775 - RS_RS20070 0.39 -0.8
748,775 - RS_RS20070 0.39 -1.5
749,236 + RS_RS20070 0.81 -1.5

Or see this region's nucleotide sequence