Experiment: Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS19510 and RS_RS19515 are separated by 269 nucleotides RS_RS19515 and RS_RS19520 are separated by 5 nucleotides RS_RS19520 and RS_RS19525 are separated by 26 nucleotides
RS_RS19510: RS_RS19510 - DNA-binding response regulator, at 611,145 to 611,819
_RS19510
RS_RS19515: RS_RS19515 - hypothetical protein, at 612,089 to 612,394
_RS19515
RS_RS19520: RS_RS19520 - TolC family protein, at 612,400 to 613,725
_RS19520
RS_RS19525: RS_RS19525 - efflux RND transporter periplasmic adaptor subunit, at 613,752 to 614,966
_RS19525
Position (kb) 612
613
614 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 611.530 kb on + strand, within RS_RS19510 at 611.531 kb on - strand, within RS_RS19510 at 611.686 kb on + strand, within RS_RS19510 at 611.686 kb on + strand, within RS_RS19510 at 611.707 kb on + strand, within RS_RS19510 at 611.707 kb on + strand, within RS_RS19510 at 611.776 kb on + strand at 611.777 kb on - strand at 611.777 kb on - strand at 611.826 kb on - strand at 611.826 kb on - strand at 612.039 kb on + strand at 612.040 kb on - strand at 612.255 kb on - strand, within RS_RS19515 at 612.255 kb on - strand, within RS_RS19515 at 612.256 kb on + strand, within RS_RS19515 at 612.257 kb on - strand, within RS_RS19515 at 612.317 kb on + strand, within RS_RS19515 at 612.368 kb on + strand at 613.567 kb on + strand, within RS_RS19520 at 613.661 kb on - strand at 614.616 kb on + strand, within RS_RS19525 at 614.716 kb on + strand, within RS_RS19525 at 614.716 kb on + strand, within RS_RS19525 at 614.716 kb on + strand, within RS_RS19525
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 611,530 + RS_RS19510 0.57 -0.7 611,531 - RS_RS19510 0.57 -1.1 611,686 + RS_RS19510 0.80 -0.5 611,686 + RS_RS19510 0.80 -1.0 611,707 + RS_RS19510 0.83 -3.0 611,707 + RS_RS19510 0.83 -1.2 611,776 + +0.8 611,777 - +0.8 611,777 - -0.2 611,826 - -0.2 611,826 - -0.7 612,039 + -0.9 612,040 - +0.8 612,255 - RS_RS19515 0.54 +0.8 612,255 - RS_RS19515 0.54 +0.8 612,256 + RS_RS19515 0.55 +0.8 612,257 - RS_RS19515 0.55 -1.4 612,317 + RS_RS19515 0.75 +0.5 612,368 + +0.8 613,567 + RS_RS19520 0.88 -1.5 613,661 - -0.6 614,616 + RS_RS19525 0.71 +2.4 614,716 + RS_RS19525 0.79 -0.1 614,716 + RS_RS19525 0.79 -0.6 614,716 + RS_RS19525 0.79 -2.5
Or see this region's nucleotide sequence