Experiment: Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18920 and RS_RS18925 overlap by 4 nucleotides RS_RS18925 and RS_RS18930 are separated by 4 nucleotides RS_RS18930 and RS_RS18935 are separated by 38 nucleotides RS_RS18935 and RS_RS18940 overlap by 26 nucleotides RS_RS18940 and RS_RS18945 overlap by 4 nucleotides
RS_RS18920: RS_RS18920 - AMP-dependent synthetase, at 474,001 to 475,692
_RS18920
RS_RS18925: RS_RS18925 - membrane protein, at 475,689 to 476,306
_RS18925
RS_RS18930: RS_RS18930 - acyl carrier protein, at 476,311 to 476,556
_RS18930
RS_RS18935: RS_RS18935 - acyl carrier protein, at 476,595 to 476,852
_RS18935
RS_RS18940: RS_RS18940 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 476,827 to 477,621
_RS18940
RS_RS18945: RS_RS18945 - 3-oxoacyl-ACP synthase, at 477,618 to 478,343
_RS18945
Position (kb) 476
477 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 475.673 kb on - strand at 475.673 kb on - strand at 475.778 kb on - strand, within RS_RS18925 at 475.795 kb on + strand, within RS_RS18925 at 475.796 kb on - strand, within RS_RS18925 at 475.796 kb on - strand, within RS_RS18925 at 475.796 kb on - strand, within RS_RS18925 at 475.876 kb on - strand, within RS_RS18925 at 476.163 kb on + strand, within RS_RS18925 at 476.191 kb on + strand, within RS_RS18925 at 476.192 kb on - strand, within RS_RS18925 at 476.627 kb on + strand, within RS_RS18935 at 476.627 kb on + strand, within RS_RS18935 at 476.628 kb on - strand, within RS_RS18935 at 476.628 kb on - strand, within RS_RS18935 at 476.645 kb on - strand, within RS_RS18935 at 476.792 kb on + strand, within RS_RS18935 at 476.792 kb on + strand, within RS_RS18935 at 476.852 kb on + strand at 476.852 kb on + strand at 476.853 kb on - strand at 476.858 kb on + strand at 476.858 kb on + strand at 476.858 kb on + strand at 476.858 kb on + strand at 476.858 kb on + strand at 476.858 kb on + strand at 476.940 kb on - strand, within RS_RS18940 at 477.005 kb on + strand, within RS_RS18940 at 477.006 kb on - strand, within RS_RS18940 at 477.168 kb on - strand, within RS_RS18940 at 477.230 kb on + strand, within RS_RS18940 at 477.231 kb on - strand, within RS_RS18940 at 477.553 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 475,673 - -0.3 475,673 - -1.9 475,778 - RS_RS18925 0.14 -1.3 475,795 + RS_RS18925 0.17 +0.9 475,796 - RS_RS18925 0.17 -0.3 475,796 - RS_RS18925 0.17 +0.9 475,796 - RS_RS18925 0.17 -1.5 475,876 - RS_RS18925 0.30 -0.6 476,163 + RS_RS18925 0.77 +2.5 476,191 + RS_RS18925 0.81 +0.9 476,192 - RS_RS18925 0.81 +0.9 476,627 + RS_RS18935 0.12 +0.9 476,627 + RS_RS18935 0.12 -3.2 476,628 - RS_RS18935 0.13 -1.4 476,628 - RS_RS18935 0.13 -0.5 476,645 - RS_RS18935 0.19 -1.1 476,792 + RS_RS18935 0.76 +0.9 476,792 + RS_RS18935 0.76 +0.5 476,852 + -0.6 476,852 + -0.5 476,853 - -0.6 476,858 + -0.6 476,858 + +0.9 476,858 + +0.9 476,858 + -0.1 476,858 + -3.1 476,858 + -0.8 476,940 - RS_RS18940 0.14 -0.5 477,005 + RS_RS18940 0.22 +0.2 477,006 - RS_RS18940 0.23 +0.9 477,168 - RS_RS18940 0.43 +0.9 477,230 + RS_RS18940 0.51 +0.9 477,231 - RS_RS18940 0.51 +1.0 477,553 + +0.6
Or see this region's nucleotide sequence