Experiment: Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18895 and RS_RS18900 overlap by 1 nucleotides RS_RS18900 and RS_RS18905 overlap by 13 nucleotides RS_RS18905 and RS_RS18910 overlap by 4 nucleotides
RS_RS18895: RS_RS18895 - membrane protein, at 467,248 to 469,665
_RS18895
RS_RS18900: RS_RS18900 - outer membrane lipoprotein carrier protein LolA, at 469,665 to 470,297
_RS18900
RS_RS18905: RS_RS18905 - acyl-CoA thioesterase, at 470,285 to 470,719
_RS18905
RS_RS18910: RS_RS18910 - histidine ammonia-lyase, at 470,716 to 472,284
_RS18910
Position (kb) 470
471 Strain fitness (log2 ratio) -2
-1
0
1
2 at 469.298 kb on + strand, within RS_RS18895 at 469.298 kb on + strand, within RS_RS18895 at 469.571 kb on + strand at 469.572 kb on - strand at 469.572 kb on - strand at 469.603 kb on + strand at 469.603 kb on + strand at 469.783 kb on + strand, within RS_RS18900 at 469.783 kb on + strand, within RS_RS18900 at 469.783 kb on + strand, within RS_RS18900 at 469.784 kb on - strand, within RS_RS18900 at 469.784 kb on - strand, within RS_RS18900 at 469.784 kb on - strand, within RS_RS18900 at 469.900 kb on + strand, within RS_RS18900 at 469.901 kb on - strand, within RS_RS18900 at 469.901 kb on - strand, within RS_RS18900 at 469.901 kb on - strand, within RS_RS18900 at 470.038 kb on + strand, within RS_RS18900 at 470.038 kb on + strand, within RS_RS18900 at 470.213 kb on + strand, within RS_RS18900 at 470.491 kb on - strand, within RS_RS18905 at 470.509 kb on - strand, within RS_RS18905 at 470.613 kb on + strand, within RS_RS18905 at 470.614 kb on - strand, within RS_RS18905 at 470.622 kb on + strand, within RS_RS18905 at 470.622 kb on + strand, within RS_RS18905 at 471.327 kb on + strand, within RS_RS18910 at 471.426 kb on - strand, within RS_RS18910 at 471.626 kb on + strand, within RS_RS18910 at 471.627 kb on - strand, within RS_RS18910
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 469,298 + RS_RS18895 0.85 -1.0 469,298 + RS_RS18895 0.85 -0.1 469,571 + -0.5 469,572 - +0.4 469,572 - +0.9 469,603 + -2.6 469,603 + +1.8 469,783 + RS_RS18900 0.19 -1.8 469,783 + RS_RS18900 0.19 +1.7 469,783 + RS_RS18900 0.19 +0.9 469,784 - RS_RS18900 0.19 -0.4 469,784 - RS_RS18900 0.19 +0.9 469,784 - RS_RS18900 0.19 +0.9 469,900 + RS_RS18900 0.37 +0.6 469,901 - RS_RS18900 0.37 -0.6 469,901 - RS_RS18900 0.37 -0.1 469,901 - RS_RS18900 0.37 -0.9 470,038 + RS_RS18900 0.59 -1.6 470,038 + RS_RS18900 0.59 -0.4 470,213 + RS_RS18900 0.87 +0.9 470,491 - RS_RS18905 0.47 -0.1 470,509 - RS_RS18905 0.51 -0.5 470,613 + RS_RS18905 0.75 -1.1 470,614 - RS_RS18905 0.76 -1.8 470,622 + RS_RS18905 0.77 +0.9 470,622 + RS_RS18905 0.77 -0.1 471,327 + RS_RS18910 0.39 -0.9 471,426 - RS_RS18910 0.45 -0.4 471,626 + RS_RS18910 0.58 -0.8 471,627 - RS_RS18910 0.58 +0.9
Or see this region's nucleotide sequence