Experiment: Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18290 and RS_RS18295 overlap by 4 nucleotides RS_RS18295 and RS_RS18300 overlap by 4 nucleotides
RS_RS18290: RS_RS18290 - 4-alpha-glucanotransferase, at 296,140 to 298,464
_RS18290
RS_RS18295: RS_RS18295 - malto-oligosyltrehalose trehalohydrolase, at 298,461 to 300,329
_RS18295
RS_RS18300: RS_RS18300 - glycogen debranching enzyme GlgX, at 300,326 to 302,590
_RS18300
Position (kb) 298
299
300
301 Strain fitness (log2 ratio) -2
-1
0
1
2 at 297.891 kb on - strand, within RS_RS18290 at 297.891 kb on - strand, within RS_RS18290 at 297.965 kb on + strand, within RS_RS18290 at 297.965 kb on + strand, within RS_RS18290 at 298.973 kb on - strand, within RS_RS18295 at 298.973 kb on - strand, within RS_RS18295 at 299.221 kb on + strand, within RS_RS18295 at 299.221 kb on + strand, within RS_RS18295 at 299.284 kb on + strand, within RS_RS18295 at 299.284 kb on + strand, within RS_RS18295 at 299.284 kb on + strand, within RS_RS18295 at 299.285 kb on - strand, within RS_RS18295 at 299.288 kb on - strand, within RS_RS18295 at 299.288 kb on - strand, within RS_RS18295 at 299.288 kb on - strand, within RS_RS18295 at 299.545 kb on + strand, within RS_RS18295 at 299.545 kb on + strand, within RS_RS18295 at 299.545 kb on + strand, within RS_RS18295 at 299.546 kb on - strand, within RS_RS18295 at 299.674 kb on + strand, within RS_RS18295 at 299.675 kb on - strand, within RS_RS18295 at 299.675 kb on - strand, within RS_RS18295 at 299.675 kb on - strand, within RS_RS18295 at 299.675 kb on - strand, within RS_RS18295 at 299.675 kb on - strand, within RS_RS18295 at 299.702 kb on - strand, within RS_RS18295 at 299.948 kb on - strand, within RS_RS18295 at 299.948 kb on - strand, within RS_RS18295 at 300.886 kb on + strand, within RS_RS18300 at 300.888 kb on + strand, within RS_RS18300 at 300.889 kb on - strand, within RS_RS18300 at 301.191 kb on + strand, within RS_RS18300 at 301.191 kb on + strand, within RS_RS18300 at 301.191 kb on + strand, within RS_RS18300 at 301.192 kb on - strand, within RS_RS18300
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 297,891 - RS_RS18290 0.75 +0.9 297,891 - RS_RS18290 0.75 -0.3 297,965 + RS_RS18290 0.78 +1.9 297,965 + RS_RS18290 0.78 +0.5 298,973 - RS_RS18295 0.27 -0.3 298,973 - RS_RS18295 0.27 +0.8 299,221 + RS_RS18295 0.41 +0.1 299,221 + RS_RS18295 0.41 +1.2 299,284 + RS_RS18295 0.44 +0.9 299,284 + RS_RS18295 0.44 +0.9 299,284 + RS_RS18295 0.44 +1.2 299,285 - RS_RS18295 0.44 +0.0 299,288 - RS_RS18295 0.44 +0.9 299,288 - RS_RS18295 0.44 -0.7 299,288 - RS_RS18295 0.44 +0.9 299,545 + RS_RS18295 0.58 -0.1 299,545 + RS_RS18295 0.58 -0.4 299,545 + RS_RS18295 0.58 +0.9 299,546 - RS_RS18295 0.58 -0.2 299,674 + RS_RS18295 0.65 +0.5 299,675 - RS_RS18295 0.65 +0.9 299,675 - RS_RS18295 0.65 -0.3 299,675 - RS_RS18295 0.65 -0.4 299,675 - RS_RS18295 0.65 +0.9 299,675 - RS_RS18295 0.65 -0.6 299,702 - RS_RS18295 0.66 +0.9 299,948 - RS_RS18295 0.80 -1.2 299,948 - RS_RS18295 0.80 +0.9 300,886 + RS_RS18300 0.25 +0.0 300,888 + RS_RS18300 0.25 -2.1 300,889 - RS_RS18300 0.25 -0.5 301,191 + RS_RS18300 0.38 +0.9 301,191 + RS_RS18300 0.38 -0.2 301,191 + RS_RS18300 0.38 +0.9 301,192 - RS_RS18300 0.38 +0.9
Or see this region's nucleotide sequence