Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS06055

Experiment: Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRS_RS06050 and RS_RS06055 are separated by 154 nucleotidesRS_RS06055 and RS_RS06060 are separated by 84 nucleotides RS_RS06050: RS_RS06050 - EEP domain-containing protein, at 1,276,644 to 1,277,513 _RS06050 RS_RS06055: RS_RS06055 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 1,277,668 to 1,279,020 _RS06055 RS_RS06060: RS_RS06060 - BAX inhibitor (BI)-1/YccA family protein, at 1,279,105 to 1,279,806 _RS06060 Position (kb) 1277 1278 1279 1280Strain fitness (log2 ratio) -2 -1 0 1at 1277.086 kb on + strand, within RS_RS06050at 1277.089 kb on + strand, within RS_RS06050at 1277.090 kb on - strand, within RS_RS06050at 1277.533 kb on - strandat 1277.533 kb on - strandat 1277.749 kb on - strandat 1277.831 kb on - strand, within RS_RS06055at 1278.144 kb on + strand, within RS_RS06055at 1278.145 kb on - strand, within RS_RS06055at 1278.424 kb on + strand, within RS_RS06055at 1278.424 kb on + strand, within RS_RS06055at 1278.874 kb on + strand, within RS_RS06055at 1278.875 kb on - strand, within RS_RS06055at 1278.875 kb on - strand, within RS_RS06055at 1279.199 kb on + strand, within RS_RS06060at 1279.200 kb on - strand, within RS_RS06060at 1279.238 kb on + strand, within RS_RS06060at 1279.239 kb on - strand, within RS_RS06060at 1279.583 kb on + strand, within RS_RS06060at 1279.718 kb on + strand, within RS_RS06060at 1279.719 kb on - strand, within RS_RS06060at 1279.719 kb on - strand, within RS_RS06060at 1279.722 kb on + strand, within RS_RS06060

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
remove
1,277,086 + RS_RS06050 0.51 +0.9
1,277,089 + RS_RS06050 0.51 -0.0
1,277,090 - RS_RS06050 0.51 +0.9
1,277,533 - +0.5
1,277,533 - +0.9
1,277,749 - -0.6
1,277,831 - RS_RS06055 0.12 -0.3
1,278,144 + RS_RS06055 0.35 -0.1
1,278,145 - RS_RS06055 0.35 -0.7
1,278,424 + RS_RS06055 0.56 -0.7
1,278,424 + RS_RS06055 0.56 -0.5
1,278,874 + RS_RS06055 0.89 +0.9
1,278,875 - RS_RS06055 0.89 +0.9
1,278,875 - RS_RS06055 0.89 -0.6
1,279,199 + RS_RS06060 0.13 +0.9
1,279,200 - RS_RS06060 0.14 -1.5
1,279,238 + RS_RS06060 0.19 +0.9
1,279,239 - RS_RS06060 0.19 +0.9
1,279,583 + RS_RS06060 0.68 -0.8
1,279,718 + RS_RS06060 0.87 -2.7
1,279,719 - RS_RS06060 0.87 -0.7
1,279,719 - RS_RS06060 0.87 +0.9
1,279,722 + RS_RS06060 0.88 +0.9

Or see this region's nucleotide sequence