Experiment: Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS04575 and RS_RS04580 overlap by 11 nucleotides RS_RS04580 and RS_RS04585 are separated by 32 nucleotides RS_RS04585 and RS_RS04590 are separated by 177 nucleotides RS_RS04590 and RS_RS04595 are separated by 54 nucleotides
RS_RS04575: RS_RS04575 - methionine import ATP-binding protein MetN, at 971,784 to 972,836
_RS04575
RS_RS04580: RS_RS04580 - ABC transporter permease, at 972,826 to 973,479
_RS04580
RS_RS04585: RS_RS04585 - MetQ/NlpA family ABC transporter substrate-binding protein, at 973,512 to 974,312
_RS04585
RS_RS04590: RS_RS04590 - electron transfer flavoprotein subunit beta/FixA family protein, at 974,490 to 975,239
_RS04590
RS_RS04595: RS_RS04595 - electron transfer flavoprotein subunit alpha, at 975,294 to 976,229
_RS04595
Position (kb) 973
974
975 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 973.090 kb on - strand, within RS_RS04580 at 973.228 kb on + strand, within RS_RS04580 at 973.229 kb on - strand, within RS_RS04580 at 973.707 kb on + strand, within RS_RS04585 at 973.758 kb on + strand, within RS_RS04585 at 974.109 kb on + strand, within RS_RS04585 at 974.110 kb on - strand, within RS_RS04585 at 974.110 kb on - strand, within RS_RS04585 at 974.244 kb on + strand at 974.245 kb on - strand at 974.245 kb on - strand at 974.339 kb on + strand at 974.339 kb on + strand at 974.340 kb on - strand at 974.364 kb on + strand at 974.364 kb on + strand at 974.365 kb on - strand at 974.365 kb on - strand at 974.440 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 973,090 - RS_RS04580 0.40 +1.0 973,228 + RS_RS04580 0.61 +1.4 973,229 - RS_RS04580 0.62 +1.0 973,707 + RS_RS04585 0.24 +0.0 973,758 + RS_RS04585 0.31 +1.0 974,109 + RS_RS04585 0.75 -0.5 974,110 - RS_RS04585 0.75 +1.0 974,110 - RS_RS04585 0.75 +0.0 974,244 + +0.0 974,245 - +0.4 974,245 - -4.3 974,339 + +1.0 974,339 + +0.0 974,340 - +1.0 974,364 + +1.0 974,364 + -1.2 974,365 - +0.0 974,365 - -0.4 974,440 - -0.8
Or see this region's nucleotide sequence