Experiment: Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS03155 and RS_RS03160 are separated by 64 nucleotides RS_RS03160 and RS_RS03165 are separated by 212 nucleotides RS_RS03165 and RS_RS03170 are separated by 80 nucleotides
RS_RS03155: RS_RS03155 - lipoprotein, at 676,243 to 677,253
_RS03155
RS_RS03160: RS_RS03160 - cytochrome c, at 677,318 to 677,596
_RS03160
RS_RS03165: RS_RS03165 - hypothetical protein, at 677,809 to 678,165
_RS03165
RS_RS03170: RS_RS03170 - hypothetical protein, at 678,246 to 678,974
_RS03170
Position (kb) 677
678 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 676.388 kb on + strand, within RS_RS03155 at 676.388 kb on + strand, within RS_RS03155 at 676.486 kb on + strand, within RS_RS03155 at 676.698 kb on + strand, within RS_RS03155 at 676.717 kb on + strand, within RS_RS03155 at 676.718 kb on - strand, within RS_RS03155 at 677.276 kb on + strand at 677.285 kb on + strand at 677.285 kb on + strand at 677.286 kb on - strand at 677.432 kb on + strand, within RS_RS03160 at 677.631 kb on + strand at 677.631 kb on + strand at 677.632 kb on - strand at 677.923 kb on + strand, within RS_RS03165 at 678.016 kb on + strand, within RS_RS03165 at 678.016 kb on + strand, within RS_RS03165 at 678.017 kb on - strand, within RS_RS03165 at 678.039 kb on - strand, within RS_RS03165 at 678.136 kb on - strand at 678.146 kb on + strand at 678.147 kb on - strand at 678.147 kb on - strand at 678.163 kb on + strand at 678.163 kb on + strand at 678.228 kb on + strand at 678.228 kb on + strand at 678.319 kb on + strand, within RS_RS03170 at 678.320 kb on - strand, within RS_RS03170 at 678.320 kb on - strand, within RS_RS03170
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 676,388 + RS_RS03155 0.14 -0.6 676,388 + RS_RS03155 0.14 +1.1 676,486 + RS_RS03155 0.24 +2.1 676,698 + RS_RS03155 0.45 +1.1 676,717 + RS_RS03155 0.47 +1.3 676,718 - RS_RS03155 0.47 +0.3 677,276 + -0.8 677,285 + +1.7 677,285 + -0.5 677,286 - +1.1 677,432 + RS_RS03160 0.41 -2.0 677,631 + -0.1 677,631 + +1.1 677,632 - -1.3 677,923 + RS_RS03165 0.32 -0.7 678,016 + RS_RS03165 0.58 +1.1 678,016 + RS_RS03165 0.58 -1.9 678,017 - RS_RS03165 0.58 +0.1 678,039 - RS_RS03165 0.64 -1.8 678,136 - -0.5 678,146 + -0.8 678,147 - +1.1 678,147 - +1.1 678,163 + -1.0 678,163 + -3.6 678,228 + -0.8 678,228 + -1.3 678,319 + RS_RS03170 0.10 -0.1 678,320 - RS_RS03170 0.10 +1.1 678,320 - RS_RS03170 0.10 -1.4
Or see this region's nucleotide sequence