Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS03055

Experiment: Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS03050 and RS_RS03055 are separated by 264 nucleotidesRS_RS03055 and RS_RS03060 are separated by 15 nucleotidesRS_RS03060 and RS_RS03065 overlap by 20 nucleotides RS_RS03050: RS_RS03050 - hypothetical protein, at 655,891 to 656,583 _RS03050 RS_RS03055: RS_RS03055 - hypothetical protein, at 656,848 to 657,765 _RS03055 RS_RS03060: RS_RS03060 - FMN-binding protein, at 657,781 to 658,296 _RS03060 RS_RS03065: RS_RS03065 - FAD:protein FMN transferase, at 658,277 to 659,173 _RS03065 Position (kb) 656 657 658Strain fitness (log2 ratio) -3 -2 -1 0 1at 655.868 kb on + strandat 655.868 kb on + strandat 655.868 kb on + strandat 656.098 kb on + strand, within RS_RS03050at 656.099 kb on - strand, within RS_RS03050at 656.099 kb on - strand, within RS_RS03050at 656.184 kb on + strand, within RS_RS03050at 656.230 kb on + strand, within RS_RS03050at 656.248 kb on + strand, within RS_RS03050at 656.248 kb on + strand, within RS_RS03050at 656.398 kb on + strand, within RS_RS03050at 656.398 kb on + strand, within RS_RS03050at 656.407 kb on + strand, within RS_RS03050at 656.407 kb on + strand, within RS_RS03050at 656.408 kb on - strand, within RS_RS03050at 656.408 kb on - strand, within RS_RS03050at 656.428 kb on + strand, within RS_RS03050at 656.429 kb on - strand, within RS_RS03050at 656.429 kb on - strand, within RS_RS03050at 656.554 kb on + strandat 656.555 kb on - strandat 656.609 kb on + strandat 656.609 kb on + strandat 656.609 kb on + strandat 656.609 kb on + strandat 656.806 kb on + strandat 656.807 kb on - strandat 656.944 kb on + strand, within RS_RS03055at 656.945 kb on - strand, within RS_RS03055at 656.950 kb on + strand, within RS_RS03055at 657.031 kb on + strand, within RS_RS03055at 657.032 kb on - strand, within RS_RS03055at 657.064 kb on + strand, within RS_RS03055at 657.065 kb on - strand, within RS_RS03055at 657.098 kb on - strand, within RS_RS03055at 657.106 kb on + strand, within RS_RS03055at 657.106 kb on + strand, within RS_RS03055at 657.106 kb on + strand, within RS_RS03055at 657.106 kb on + strand, within RS_RS03055at 657.106 kb on + strand, within RS_RS03055at 657.107 kb on - strand, within RS_RS03055at 657.107 kb on - strand, within RS_RS03055at 657.139 kb on + strand, within RS_RS03055at 657.242 kb on - strand, within RS_RS03055at 657.260 kb on - strand, within RS_RS03055at 657.261 kb on + strand, within RS_RS03055at 657.262 kb on - strand, within RS_RS03055at 657.286 kb on + strand, within RS_RS03055at 657.286 kb on + strand, within RS_RS03055at 657.287 kb on - strand, within RS_RS03055at 657.287 kb on - strand, within RS_RS03055at 657.287 kb on - strand, within RS_RS03055at 657.287 kb on - strand, within RS_RS03055at 657.542 kb on - strand, within RS_RS03055at 657.542 kb on - strand, within RS_RS03055at 657.542 kb on - strand, within RS_RS03055at 657.550 kb on + strand, within RS_RS03055at 657.551 kb on - strand, within RS_RS03055at 657.551 kb on - strand, within RS_RS03055at 657.583 kb on + strand, within RS_RS03055at 657.583 kb on + strand, within RS_RS03055at 657.583 kb on + strand, within RS_RS03055at 657.583 kb on + strand, within RS_RS03055at 657.584 kb on - strand, within RS_RS03055at 657.584 kb on - strand, within RS_RS03055at 657.731 kb on - strandat 657.755 kb on - strandat 657.757 kb on + strandat 657.757 kb on + strandat 657.800 kb on + strandat 657.835 kb on + strand, within RS_RS03060at 657.836 kb on - strand, within RS_RS03060at 657.836 kb on - strand, within RS_RS03060at 657.847 kb on + strand, within RS_RS03060at 657.847 kb on + strand, within RS_RS03060at 657.848 kb on - strand, within RS_RS03060at 657.848 kb on - strand, within RS_RS03060at 658.126 kb on + strand, within RS_RS03060at 658.242 kb on + strand, within RS_RS03060at 658.276 kb on + strandat 658.276 kb on + strandat 658.276 kb on + strandat 658.276 kb on + strandat 658.277 kb on - strandat 658.277 kb on - strandat 658.277 kb on - strandat 658.277 kb on - strandat 658.294 kb on + strandat 658.502 kb on + strand, within RS_RS03065at 658.503 kb on - strand, within RS_RS03065

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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655,868 + -0.5
655,868 + -0.2
655,868 + -0.6
656,098 + RS_RS03050 0.30 +1.1
656,099 - RS_RS03050 0.30 +1.1
656,099 - RS_RS03050 0.30 -0.5
656,184 + RS_RS03050 0.42 -1.9
656,230 + RS_RS03050 0.49 -0.4
656,248 + RS_RS03050 0.52 -1.1
656,248 + RS_RS03050 0.52 +0.5
656,398 + RS_RS03050 0.73 -0.9
656,398 + RS_RS03050 0.73 -1.9
656,407 + RS_RS03050 0.74 +1.1
656,407 + RS_RS03050 0.74 +1.1
656,408 - RS_RS03050 0.75 -0.2
656,408 - RS_RS03050 0.75 -2.3
656,428 + RS_RS03050 0.77 -0.7
656,429 - RS_RS03050 0.78 +1.7
656,429 - RS_RS03050 0.78 -0.3
656,554 + -0.3
656,555 - -0.2
656,609 + -0.1
656,609 + +0.7
656,609 + +0.9
656,609 + -0.6
656,806 + -0.4
656,807 - -1.1
656,944 + RS_RS03055 0.10 -1.0
656,945 - RS_RS03055 0.11 -0.4
656,950 + RS_RS03055 0.11 -0.5
657,031 + RS_RS03055 0.20 -2.9
657,032 - RS_RS03055 0.20 -0.5
657,064 + RS_RS03055 0.24 -0.9
657,065 - RS_RS03055 0.24 -1.0
657,098 - RS_RS03055 0.27 -1.1
657,106 + RS_RS03055 0.28 +1.4
657,106 + RS_RS03055 0.28 -0.9
657,106 + RS_RS03055 0.28 -1.2
657,106 + RS_RS03055 0.28 +0.1
657,106 + RS_RS03055 0.28 -0.2
657,107 - RS_RS03055 0.28 +0.1
657,107 - RS_RS03055 0.28 -1.3
657,139 + RS_RS03055 0.32 +1.1
657,242 - RS_RS03055 0.43 +0.2
657,260 - RS_RS03055 0.45 -1.0
657,261 + RS_RS03055 0.45 -0.2
657,262 - RS_RS03055 0.45 -1.5
657,286 + RS_RS03055 0.48 +1.1
657,286 + RS_RS03055 0.48 -0.5
657,287 - RS_RS03055 0.48 -0.4
657,287 - RS_RS03055 0.48 -1.0
657,287 - RS_RS03055 0.48 +1.1
657,287 - RS_RS03055 0.48 -0.7
657,542 - RS_RS03055 0.76 +1.1
657,542 - RS_RS03055 0.76 -0.6
657,542 - RS_RS03055 0.76 -1.0
657,550 + RS_RS03055 0.76 -0.8
657,551 - RS_RS03055 0.77 -0.4
657,551 - RS_RS03055 0.77 +0.1
657,583 + RS_RS03055 0.80 -1.3
657,583 + RS_RS03055 0.80 +1.1
657,583 + RS_RS03055 0.80 +0.5
657,583 + RS_RS03055 0.80 -0.4
657,584 - RS_RS03055 0.80 -0.4
657,584 - RS_RS03055 0.80 +1.1
657,731 - -0.6
657,755 - -0.5
657,757 + -2.4
657,757 + -1.9
657,800 + -1.5
657,835 + RS_RS03060 0.10 +0.0
657,836 - RS_RS03060 0.11 +1.1
657,836 - RS_RS03060 0.11 +1.6
657,847 + RS_RS03060 0.13 +1.1
657,847 + RS_RS03060 0.13 +0.6
657,848 - RS_RS03060 0.13 +1.1
657,848 - RS_RS03060 0.13 -0.9
658,126 + RS_RS03060 0.67 +0.4
658,242 + RS_RS03060 0.89 +0.1
658,276 + -0.4
658,276 + -0.5
658,276 + -0.2
658,276 + -0.7
658,277 - +1.1
658,277 - -0.6
658,277 - +0.6
658,277 - +1.1
658,294 + -0.7
658,502 + RS_RS03065 0.25 -0.1
658,503 - RS_RS03065 0.25 +1.1

Or see this region's nucleotide sequence