Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10335 and HMPREF1058_RS10330 are separated by 378 nucleotides HMPREF1058_RS10330 and HMPREF1058_RS21615 are separated by 3 nucleotides HMPREF1058_RS21615 and HMPREF1058_RS10325 are separated by 41 nucleotides HMPREF1058_RS10325 and HMPREF1058_RS10315 are separated by 194 nucleotides
HMPREF1058_RS10335: HMPREF1058_RS10335 - hypothetical protein, at 690,432 to 691,019
_RS10335
HMPREF1058_RS10330: HMPREF1058_RS10330 - hypothetical protein, at 691,398 to 691,763
_RS10330
HMPREF1058_RS21615: HMPREF1058_RS21615 - hypothetical protein, at 691,767 to 691,907
_RS21615
HMPREF1058_RS10325: HMPREF1058_RS10325 - hypothetical protein, at 691,949 to 692,188
_RS10325
HMPREF1058_RS10315: HMPREF1058_RS10315 - sigma-70 family RNA polymerase sigma factor, at 692,383 to 692,910
_RS10315
Position (kb) 691
692 Strain fitness (log2 ratio) -2
-1
0
1
2 at 690.868 kb on - strand, within HMPREF1058_RS10335 at 690.955 kb on + strand, within HMPREF1058_RS10335 at 690.980 kb on + strand at 691.253 kb on - strand at 691.253 kb on - strand at 691.337 kb on - strand at 691.337 kb on - strand at 691.455 kb on - strand, within HMPREF1058_RS10330 at 691.482 kb on - strand, within HMPREF1058_RS10330 at 691.509 kb on - strand, within HMPREF1058_RS10330 at 691.599 kb on - strand, within HMPREF1058_RS10330 at 691.688 kb on - strand, within HMPREF1058_RS10330 at 691.688 kb on - strand, within HMPREF1058_RS10330 at 691.777 kb on - strand at 691.843 kb on - strand, within HMPREF1058_RS21615 at 691.889 kb on - strand, within HMPREF1058_RS21615 at 691.934 kb on - strand at 691.987 kb on + strand, within HMPREF1058_RS10325 at 691.987 kb on + strand, within HMPREF1058_RS10325 at 691.988 kb on - strand, within HMPREF1058_RS10325 at 691.988 kb on - strand, within HMPREF1058_RS10325 at 692.055 kb on + strand, within HMPREF1058_RS10325 at 692.056 kb on - strand, within HMPREF1058_RS10325 at 692.056 kb on - strand, within HMPREF1058_RS10325 at 692.059 kb on - strand, within HMPREF1058_RS10325 at 692.063 kb on - strand, within HMPREF1058_RS10325 at 692.063 kb on - strand, within HMPREF1058_RS10325 at 692.066 kb on + strand, within HMPREF1058_RS10325 at 692.129 kb on - strand, within HMPREF1058_RS10325 at 692.174 kb on + strand at 692.187 kb on - strand at 692.193 kb on - strand at 692.215 kb on - strand at 692.216 kb on + strand at 692.216 kb on + strand at 692.362 kb on + strand at 692.363 kb on - strand at 692.367 kb on - strand at 692.367 kb on - strand at 692.431 kb on - strand at 692.463 kb on - strand, within HMPREF1058_RS10315 at 692.489 kb on - strand, within HMPREF1058_RS10315 at 692.489 kb on - strand, within HMPREF1058_RS10315 at 692.489 kb on - strand, within HMPREF1058_RS10315 at 692.514 kb on - strand, within HMPREF1058_RS10315 at 692.518 kb on - strand, within HMPREF1058_RS10315 at 692.520 kb on - strand, within HMPREF1058_RS10315 at 692.589 kb on - strand, within HMPREF1058_RS10315 at 692.609 kb on - strand, within HMPREF1058_RS10315 at 692.640 kb on - strand, within HMPREF1058_RS10315 at 692.644 kb on - strand at 692.743 kb on - strand, within HMPREF1058_RS10315 at 692.748 kb on - strand at 692.826 kb on - strand, within HMPREF1058_RS10315 at 692.828 kb on - strand, within HMPREF1058_RS10315 at 692.847 kb on - strand, within HMPREF1058_RS10315 at 692.869 kb on - strand at 692.896 kb on - strand at 692.907 kb on - strand at 692.907 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 690,868 - HMPREF1058_RS10335 0.74 -0.2 690,955 + HMPREF1058_RS10335 0.89 -2.5 690,980 + +1.1 691,253 - +1.7 691,253 - +0.8 691,337 - -1.1 691,337 - -0.8 691,455 - HMPREF1058_RS10330 0.16 +0.0 691,482 - HMPREF1058_RS10330 0.23 -0.8 691,509 - HMPREF1058_RS10330 0.30 -1.8 691,599 - HMPREF1058_RS10330 0.55 -1.0 691,688 - HMPREF1058_RS10330 0.79 +0.8 691,688 - HMPREF1058_RS10330 0.79 +0.5 691,777 - -0.4 691,843 - HMPREF1058_RS21615 0.54 -1.7 691,889 - HMPREF1058_RS21615 0.87 -1.0 691,934 - -0.7 691,987 + HMPREF1058_RS10325 0.16 -2.7 691,987 + HMPREF1058_RS10325 0.16 -1.9 691,988 - HMPREF1058_RS10325 0.16 +1.9 691,988 - HMPREF1058_RS10325 0.16 -0.5 692,055 + HMPREF1058_RS10325 0.44 -1.1 692,056 - HMPREF1058_RS10325 0.45 -0.1 692,056 - HMPREF1058_RS10325 0.45 -1.1 692,059 - HMPREF1058_RS10325 0.46 +0.2 692,063 - HMPREF1058_RS10325 0.47 +1.2 692,063 - HMPREF1058_RS10325 0.47 -1.0 692,066 + HMPREF1058_RS10325 0.49 -1.1 692,129 - HMPREF1058_RS10325 0.75 -0.5 692,174 + +2.2 692,187 - +0.9 692,193 - +0.4 692,215 - +0.4 692,216 + -2.7 692,216 + -1.6 692,362 + -0.9 692,363 - -0.3 692,367 - +0.9 692,367 - +0.2 692,431 - -1.5 692,463 - HMPREF1058_RS10315 0.15 -0.4 692,489 - HMPREF1058_RS10315 0.20 +0.4 692,489 - HMPREF1058_RS10315 0.20 +0.1 692,489 - HMPREF1058_RS10315 0.20 +0.6 692,514 - HMPREF1058_RS10315 0.25 -0.5 692,518 - HMPREF1058_RS10315 0.26 +0.4 692,520 - HMPREF1058_RS10315 0.26 +0.9 692,589 - HMPREF1058_RS10315 0.39 +0.3 692,609 - HMPREF1058_RS10315 0.43 +1.8 692,640 - HMPREF1058_RS10315 0.49 -0.0 692,644 - +1.0 692,743 - HMPREF1058_RS10315 0.68 -0.8 692,748 - -0.2 692,826 - HMPREF1058_RS10315 0.84 -0.6 692,828 - HMPREF1058_RS10315 0.84 -0.4 692,847 - HMPREF1058_RS10315 0.88 -0.0 692,869 - +0.1 692,896 - -1.1 692,907 - -1.4 692,907 - -0.7
Or see this region's nucleotide sequence