Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18880 and HMPREF1058_RS18875 are separated by 19 nucleotides HMPREF1058_RS18875 and HMPREF1058_RS18870 are separated by 416 nucleotides HMPREF1058_RS18870 and HMPREF1058_RS21385 are separated by 26 nucleotides HMPREF1058_RS21385 and HMPREF1058_RS18865 are separated by 68 nucleotides
HMPREF1058_RS18880: HMPREF1058_RS18880 - ATP-binding protein, at 53,047 to 53,976
_RS18880
HMPREF1058_RS18875: HMPREF1058_RS18875 - hypothetical protein, at 53,996 to 54,253
_RS18875
HMPREF1058_RS18870: HMPREF1058_RS18870 - hypothetical protein, at 54,670 to 54,897
_RS18870
HMPREF1058_RS21385: HMPREF1058_RS21385 - tRNA-OTHER, at 54,924 to 55,005
_RS21385
HMPREF1058_RS18865: HMPREF1058_RS18865 - hypothetical protein, at 55,074 to 55,259
_RS18865
Position (kb) 54
55 Strain fitness (log2 ratio) -2
-1
0
1
2 at 53.719 kb on - strand, within HMPREF1058_RS18880 at 53.803 kb on + strand, within HMPREF1058_RS18880 at 53.803 kb on + strand, within HMPREF1058_RS18880 at 53.803 kb on + strand, within HMPREF1058_RS18880 at 53.804 kb on - strand, within HMPREF1058_RS18880 at 53.805 kb on + strand, within HMPREF1058_RS18880 at 53.805 kb on + strand at 53.889 kb on + strand at 53.947 kb on + strand at 54.044 kb on + strand, within HMPREF1058_RS18875 at 54.463 kb on + strand at 54.465 kb on + strand at 54.465 kb on + strand at 54.595 kb on + strand at 54.595 kb on + strand at 54.595 kb on + strand at 54.693 kb on + strand, within HMPREF1058_RS18870 at 54.693 kb on + strand, within HMPREF1058_RS18870 at 54.748 kb on + strand, within HMPREF1058_RS18870 at 55.047 kb on + strand at 55.060 kb on + strand at 55.080 kb on + strand at 55.081 kb on - strand at 55.160 kb on + strand, within HMPREF1058_RS18865 at 55.218 kb on + strand, within HMPREF1058_RS18865 at 55.243 kb on - strand at 55.327 kb on + strand at 55.327 kb on + strand at 55.331 kb on + strand at 55.351 kb on + strand at 55.352 kb on - strand at 55.463 kb on + strand at 55.463 kb on + strand at 55.505 kb on + strand at 55.535 kb on + strand at 55.535 kb on + strand at 55.535 kb on + strand at 55.537 kb on + strand at 55.538 kb on - strand at 55.549 kb on + strand at 55.550 kb on - strand at 55.582 kb on + strand at 55.585 kb on + strand at 55.586 kb on - strand at 55.616 kb on + strand at 55.616 kb on + strand at 55.618 kb on + strand at 55.619 kb on - strand at 55.631 kb on - strand at 55.634 kb on + strand at 55.731 kb on + strand at 55.802 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 53,719 - HMPREF1058_RS18880 0.72 -0.4 53,803 + HMPREF1058_RS18880 0.81 -0.2 53,803 + HMPREF1058_RS18880 0.81 +0.7 53,803 + HMPREF1058_RS18880 0.81 -1.3 53,804 - HMPREF1058_RS18880 0.81 -2.0 53,805 + HMPREF1058_RS18880 0.82 +0.5 53,805 + +0.4 53,889 + -0.3 53,947 + -0.6 54,044 + HMPREF1058_RS18875 0.19 -0.4 54,463 + -0.3 54,465 + +0.9 54,465 + -1.3 54,595 + +0.7 54,595 + +0.0 54,595 + +1.3 54,693 + HMPREF1058_RS18870 0.10 -1.9 54,693 + HMPREF1058_RS18870 0.10 -1.8 54,748 + HMPREF1058_RS18870 0.34 -0.4 55,047 + -0.6 55,060 + -0.6 55,080 + +1.2 55,081 - +0.1 55,160 + HMPREF1058_RS18865 0.46 +2.0 55,218 + HMPREF1058_RS18865 0.77 +2.3 55,243 - -0.1 55,327 + -0.1 55,327 + -1.9 55,331 + +1.7 55,351 + +0.9 55,352 - +1.7 55,463 + +1.5 55,463 + -2.5 55,505 + +0.7 55,535 + -0.6 55,535 + +1.4 55,535 + +0.1 55,537 + -0.1 55,538 - +0.7 55,549 + -0.4 55,550 - +0.1 55,582 + +0.4 55,585 + +0.4 55,586 - +0.4 55,616 + +1.0 55,616 + -2.1 55,618 + -1.1 55,619 - +1.1 55,631 - -2.0 55,634 + -2.1 55,731 + +0.2 55,802 + -0.2
Or see this region's nucleotide sequence