Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS18525

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
134,473	-				-0.7
134,516	+				+2.0
134,516	+				-0.4
134,517	-				+0.6
134,517	-				+0.1
134,575	+				-0.4
134,672	+		HMPREF1058_RS18525	0.57	-1.4
134,684	-		HMPREF1058_RS18525	0.63	-1.4
134,773	+		HMPREF1058_RS21580	0.33	-0.4
134,822	+		HMPREF1058_RS21580	0.66	-2.5
134,886	-				-0.6
134,894	-				-0.6
134,910	-				+1.9
134,910	-				-0.8
134,910	-				-0.1
134,952	+				-2.4
134,955	-				+0.1
134,966	+				-0.1
134,966	+				-0.6
135,017	-				-0.4
135,269	+		HMPREF1058_RS18520	0.36	-0.6
135,348	+		HMPREF1058_RS18520	0.48	-1.3
135,349	-		HMPREF1058_RS18520	0.48	-0.4
135,349	-		HMPREF1058_RS18520	0.48	-1.1
135,539	+		HMPREF1058_RS18520	0.77	+0.1
135,654	-				-0.9
135,696	-				-0.2
135,731	+				-1.2
135,757	+				-2.5