Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS18505

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
138,508	+				+0.2
138,531	+				-1.6
138,537	-				-0.3
138,537	-				-0.1
138,585	+		HMPREF1058_RS18510	0.13	-1.2
138,638	+		HMPREF1058_RS18510	0.23	-0.7
138,808	-		HMPREF1058_RS18510	0.58	+1.2
138,889	+		HMPREF1058_RS18510	0.74	+1.3
139,045	-				-1.7
139,080	+				-1.4
139,229	-				-0.7
139,712	-		HMPREF1058_RS18505	0.59	-1.1
139,992	+				-0.9
139,992	+				-1.4
139,992	+				+0.1
140,044	+		HMPREF1058_RS18500	0.15	+2.7
140,045	-		HMPREF1058_RS18500	0.15	+2.5
140,095	+		HMPREF1058_RS18500	0.27	+0.7
140,095	+		HMPREF1058_RS18500	0.27	+2.5
140,106	-		HMPREF1058_RS18500	0.30	-1.3
140,106	-		HMPREF1058_RS18500	0.30	-0.1
140,113	+		HMPREF1058_RS18500	0.32	-1.9
140,113	+		HMPREF1058_RS18500	0.32	+1.1
140,113	+		HMPREF1058_RS18500	0.32	-1.8
140,113	+		HMPREF1058_RS18500	0.32	-0.1
140,114	-		HMPREF1058_RS18500	0.32	+1.4
140,114	-		HMPREF1058_RS18500	0.32	-1.4
140,116	+		HMPREF1058_RS18500	0.33	-1.9
140,116	+		HMPREF1058_RS18500	0.33	-0.5
140,117	-		HMPREF1058_RS18500	0.33	+0.4
140,117	-		HMPREF1058_RS18500	0.33	+1.4
140,137	+		HMPREF1058_RS18500	0.38	-0.9
140,241	+		HMPREF1058_RS18500	0.65	+0.4
140,241	+				+0.7
140,242	-		HMPREF1058_RS18500	0.65	-1.2
140,351	-				+1.3
140,353	-				+0.5
140,379	+				+1.7
140,379	+				-0.1
140,380	-				-1.2
140,380	-				-0.1
140,383	+				-0.4
140,438	+		HMPREF1058_RS18495	0.22	+0.6
140,438	+		HMPREF1058_RS18495	0.22	+0.6
140,605	+		HMPREF1058_RS18495	0.79	-2.0
140,623	+		HMPREF1058_RS18495	0.85	-0.2
140,625	+		HMPREF1058_RS18495	0.86	+0.7
140,626	-		HMPREF1058_RS18495	0.86	-1.7
140,680	+				-0.6
140,695	-				+1.0
140,699	+				+1.8
140,753	+				-0.1
140,755	+				+0.1
140,756	-				+0.8
140,831	-				+1.7
140,852	+				-2.3
140,871	+				-0.1
140,910	+				-0.9