Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS18465

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
146,126	-		HMPREF1058_RS18470	0.32	-0.9
146,127	+		HMPREF1058_RS18470	0.32	-0.9
146,130	+		HMPREF1058_RS18470	0.32	-0.1
146,133	+		HMPREF1058_RS18470	0.33	-1.7
146,143	-		HMPREF1058_RS18470	0.34	+0.8
146,146	+		HMPREF1058_RS18470	0.34	-0.6
146,147	-		HMPREF1058_RS18470	0.34	+0.0
146,197	+		HMPREF1058_RS18470	0.39	-1.7
146,197	+		HMPREF1058_RS18470	0.39	-0.8
146,197	+		HMPREF1058_RS18470	0.39	+0.3
146,240	-		HMPREF1058_RS18470	0.42	-0.5
146,308	-		HMPREF1058_RS18470	0.49	+2.0
146,323	+		HMPREF1058_RS18470	0.50	+0.1
146,368	-		HMPREF1058_RS18470	0.54	-0.2
146,394	+		HMPREF1058_RS18470	0.56	-1.1
146,620	-		HMPREF1058_RS18470	0.77	+0.5
146,724	+		HMPREF1058_RS18470	0.87	+0.0
146,727	+		HMPREF1058_RS18470	0.87	-0.2
146,737	+		HMPREF1058_RS18470	0.88	-0.3
146,738	-		HMPREF1058_RS18470	0.88	+1.5
146,738	-		HMPREF1058_RS18470	0.88	+0.7
146,773	+				-1.9
146,774	-				-0.5
146,805	-				+2.0
146,805	-				-1.0
146,817	+				-0.6
146,817	+				+0.7
146,825	+				-0.3
146,826	-				+1.7
146,845	+				-0.6
146,854	+				-0.2
146,855	-				+1.0
146,899	-				+0.7
146,930	+				+1.2
146,964	-				+3.3
146,964	-				+0.7
147,006	-				+0.7
147,025	-				+0.3
147,029	+				-1.2
147,029	+				+0.1
147,030	-				-0.7
147,034	-				+0.9
147,040	-				+1.4
147,084	+				+0.5
147,239	+		HMPREF1058_RS18465	0.11	-0.0
147,309	-		HMPREF1058_RS18465	0.17	+3.6
147,418	+		HMPREF1058_RS18465	0.28	-0.7
147,421	-		HMPREF1058_RS18465	0.28	+1.0
147,421	-		HMPREF1058_RS18465	0.28	+1.2
147,538	+		HMPREF1058_RS18465	0.39	-0.3
147,580	+		HMPREF1058_RS18465	0.43	+2.3
147,581	-		HMPREF1058_RS18465	0.43	+2.1
147,701	-		HMPREF1058_RS18465	0.55	+1.9
147,719	-		HMPREF1058_RS18465	0.56	+0.8
147,820	+		HMPREF1058_RS18465	0.66	+0.6
147,820	+		HMPREF1058_RS18465	0.66	+1.7
147,823	-		HMPREF1058_RS18465	0.66	+1.8
147,873	-		HMPREF1058_RS18465	0.71	+1.7
147,903	+		HMPREF1058_RS18465	0.74	+1.2
147,903	+		HMPREF1058_RS18465	0.74	-0.2
147,904	-		HMPREF1058_RS18465	0.74	+2.3
148,011	-		HMPREF1058_RS18465	0.84	+2.5
148,045	+		HMPREF1058_RS18465	0.87	+0.5
148,088	+				-1.6
148,100	+				+0.6
148,134	-				+2.0
148,145	-				+1.3
148,145	-				+1.1
148,204	+				-0.0
148,253	-				+0.4
148,364	-		HMPREF1058_RS18460	0.16	+0.5
148,364	-		HMPREF1058_RS18460	0.16	-0.9
148,403	-		HMPREF1058_RS18460	0.20	+2.9
148,409	+		HMPREF1058_RS18460	0.20	+0.7
148,475	+		HMPREF1058_RS18460	0.26	-1.0
148,578	+		HMPREF1058_RS18460	0.36	-0.4
148,623	-		HMPREF1058_RS18460	0.40	+1.6
148,625	-		HMPREF1058_RS18460	0.40	+1.2
148,708	+		HMPREF1058_RS18460	0.47	-0.1
148,728	-		HMPREF1058_RS18460	0.49	+1.6
148,730	-		HMPREF1058_RS18460	0.49	+1.8
148,730	-		HMPREF1058_RS18460	0.49	+0.5
148,796	+		HMPREF1058_RS18460	0.55	+0.7
148,821	-		HMPREF1058_RS18460	0.58	+1.5
148,899	-		HMPREF1058_RS18460	0.65	+3.7
148,924	+		HMPREF1058_RS18460	0.67	-1.1
148,927	+		HMPREF1058_RS18460	0.67	-1.8
148,937	-		HMPREF1058_RS18460	0.68	+0.2
148,938	+		HMPREF1058_RS18460	0.68	-2.2
148,938	+		HMPREF1058_RS18460	0.68	+1.5
148,938	+		HMPREF1058_RS18460	0.68	+0.7
148,938	+		HMPREF1058_RS18460	0.68	-1.1
148,949	-		HMPREF1058_RS18460	0.69	+2.0
148,994	+		HMPREF1058_RS18460	0.73	-0.7
149,002	+		HMPREF1058_RS18460	0.74	+1.4
149,002	+		HMPREF1058_RS18460	0.74	+0.5
149,002	+		HMPREF1058_RS18460	0.74	-1.8
149,002	+		HMPREF1058_RS18460	0.74	-1.9
149,003	-		HMPREF1058_RS18460	0.74	+1.3
149,067	-		HMPREF1058_RS18460	0.80	+0.7
149,067	-		HMPREF1058_RS18460	0.80	+0.9
149,175	+		HMPREF1058_RS18460	0.90	-1.1
149,175	+		HMPREF1058_RS18460	0.90	+1.6
149,176	-		HMPREF1058_RS18460	0.90	+2.3