Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18345 and HMPREF1058_RS18340 are separated by 34 nucleotides HMPREF1058_RS18340 and HMPREF1058_RS18335 are separated by 48 nucleotides HMPREF1058_RS18335 and HMPREF1058_RS18330 are separated by 186 nucleotides
HMPREF1058_RS18345: HMPREF1058_RS18345 - TonB-dependent receptor, at 187,287 to 190,487
_RS18345
HMPREF1058_RS18340: HMPREF1058_RS18340 - hypothetical protein, at 190,522 to 190,806
_RS18340
HMPREF1058_RS18335: HMPREF1058_RS18335 - sigma-70 family RNA polymerase sigma factor, at 190,855 to 191,409
_RS18335
HMPREF1058_RS18330: HMPREF1058_RS18330 - hypothetical protein, at 191,596 to 194,682
_RS18330
Position (kb) 190
191
192 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 189.857 kb on + strand, within HMPREF1058_RS18345 at 189.867 kb on - strand, within HMPREF1058_RS18345 at 189.867 kb on - strand, within HMPREF1058_RS18345 at 189.884 kb on + strand, within HMPREF1058_RS18345 at 189.885 kb on - strand, within HMPREF1058_RS18345 at 189.948 kb on + strand, within HMPREF1058_RS18345 at 189.949 kb on - strand, within HMPREF1058_RS18345 at 190.011 kb on + strand, within HMPREF1058_RS18345 at 190.012 kb on - strand, within HMPREF1058_RS18345 at 190.012 kb on - strand, within HMPREF1058_RS18345 at 190.084 kb on - strand, within HMPREF1058_RS18345 at 190.177 kb on + strand at 190.178 kb on - strand at 190.199 kb on + strand at 190.256 kb on + strand at 190.257 kb on - strand at 190.410 kb on - strand at 190.413 kb on + strand at 190.413 kb on + strand at 190.414 kb on - strand at 190.473 kb on - strand at 190.524 kb on - strand at 190.540 kb on + strand at 190.551 kb on + strand, within HMPREF1058_RS18340 at 190.625 kb on - strand, within HMPREF1058_RS18340 at 190.627 kb on + strand, within HMPREF1058_RS18340 at 190.683 kb on + strand, within HMPREF1058_RS18340 at 190.759 kb on + strand, within HMPREF1058_RS18340 at 190.769 kb on + strand, within HMPREF1058_RS18340 at 190.854 kb on - strand at 190.884 kb on + strand at 190.917 kb on - strand, within HMPREF1058_RS18335 at 190.964 kb on - strand, within HMPREF1058_RS18335 at 190.973 kb on - strand, within HMPREF1058_RS18335 at 191.002 kb on + strand, within HMPREF1058_RS18335 at 191.155 kb on + strand, within HMPREF1058_RS18335 at 191.285 kb on - strand, within HMPREF1058_RS18335 at 191.301 kb on + strand, within HMPREF1058_RS18335 at 191.314 kb on - strand, within HMPREF1058_RS18335 at 191.323 kb on - strand, within HMPREF1058_RS18335 at 191.327 kb on + strand, within HMPREF1058_RS18335 at 191.329 kb on + strand, within HMPREF1058_RS18335 at 191.415 kb on + strand at 191.415 kb on + strand at 191.415 kb on + strand at 191.418 kb on - strand at 191.424 kb on + strand at 191.426 kb on + strand at 191.529 kb on + strand at 191.529 kb on + strand at 191.649 kb on + strand at 191.652 kb on - strand at 191.653 kb on + strand at 191.722 kb on + strand at 191.754 kb on + strand at 191.818 kb on - strand at 191.952 kb on - strand, within HMPREF1058_RS18330 at 192.024 kb on + strand, within HMPREF1058_RS18330 at 192.105 kb on - strand, within HMPREF1058_RS18330 at 192.346 kb on - strand, within HMPREF1058_RS18330 at 192.347 kb on + strand, within HMPREF1058_RS18330 at 192.348 kb on - strand, within HMPREF1058_RS18330 at 192.354 kb on + strand, within HMPREF1058_RS18330 at 192.370 kb on + strand, within HMPREF1058_RS18330 at 192.389 kb on + strand, within HMPREF1058_RS18330
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 189,857 + HMPREF1058_RS18345 0.80 +0.7 189,867 - HMPREF1058_RS18345 0.81 -2.4 189,867 - HMPREF1058_RS18345 0.81 +2.3 189,884 + HMPREF1058_RS18345 0.81 -2.7 189,885 - HMPREF1058_RS18345 0.81 -3.3 189,948 + HMPREF1058_RS18345 0.83 -0.9 189,949 - HMPREF1058_RS18345 0.83 +0.7 190,011 + HMPREF1058_RS18345 0.85 -1.1 190,012 - HMPREF1058_RS18345 0.85 -1.9 190,012 - HMPREF1058_RS18345 0.85 -1.2 190,084 - HMPREF1058_RS18345 0.87 -1.8 190,177 + +2.7 190,178 - -1.2 190,199 + +0.6 190,256 + -2.0 190,257 - -0.9 190,410 - -1.3 190,413 + -0.6 190,413 + -0.6 190,414 - -0.8 190,473 - -0.2 190,524 - +0.3 190,540 + -0.6 190,551 + HMPREF1058_RS18340 0.10 -1.8 190,625 - HMPREF1058_RS18340 0.36 +0.0 190,627 + HMPREF1058_RS18340 0.37 -0.4 190,683 + HMPREF1058_RS18340 0.56 +1.2 190,759 + HMPREF1058_RS18340 0.83 -1.4 190,769 + HMPREF1058_RS18340 0.87 -0.2 190,854 - +0.0 190,884 + -2.0 190,917 - HMPREF1058_RS18335 0.11 -0.1 190,964 - HMPREF1058_RS18335 0.20 -1.4 190,973 - HMPREF1058_RS18335 0.21 -0.5 191,002 + HMPREF1058_RS18335 0.26 -0.6 191,155 + HMPREF1058_RS18335 0.54 +0.0 191,285 - HMPREF1058_RS18335 0.77 -1.9 191,301 + HMPREF1058_RS18335 0.80 -3.8 191,314 - HMPREF1058_RS18335 0.83 -2.6 191,323 - HMPREF1058_RS18335 0.84 +3.7 191,327 + HMPREF1058_RS18335 0.85 -2.2 191,329 + HMPREF1058_RS18335 0.85 -0.9 191,415 + -1.6 191,415 + -1.5 191,415 + -0.1 191,418 - +1.0 191,424 + -2.6 191,426 + +0.4 191,529 + -0.1 191,529 + -0.3 191,649 + -1.1 191,652 - +0.1 191,653 + -1.3 191,722 + +0.5 191,754 + -2.4 191,818 - +0.6 191,952 - HMPREF1058_RS18330 0.12 +2.4 192,024 + HMPREF1058_RS18330 0.14 +1.1 192,105 - HMPREF1058_RS18330 0.16 +0.2 192,346 - HMPREF1058_RS18330 0.24 +0.1 192,347 + HMPREF1058_RS18330 0.24 -0.2 192,348 - HMPREF1058_RS18330 0.24 -0.2 192,354 + HMPREF1058_RS18330 0.25 -0.8 192,370 + HMPREF1058_RS18330 0.25 +0.3 192,389 + HMPREF1058_RS18330 0.26 -1.4
Or see this region's nucleotide sequence