Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18300 and HMPREF1058_RS18295 are separated by 165 nucleotides HMPREF1058_RS18295 and HMPREF1058_RS18290 are separated by 125 nucleotides
HMPREF1058_RS18300: HMPREF1058_RS18300 - sugar phosphate isomerase/epimerase, at 204,676 to 205,560
_RS18300
HMPREF1058_RS18295: HMPREF1058_RS18295 - response regulator, at 205,726 to 210,129
_RS18295
HMPREF1058_RS18290: HMPREF1058_RS18290 - glycoside hydrolase family 2, at 210,255 to 212,879
_RS18290
Position (kb) 205
206
207
208
209
210
211 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 204.811 kb on - strand, within HMPREF1058_RS18300 at 204.811 kb on - strand, within HMPREF1058_RS18300 at 204.846 kb on - strand, within HMPREF1058_RS18300 at 204.873 kb on + strand, within HMPREF1058_RS18300 at 204.880 kb on + strand, within HMPREF1058_RS18300 at 204.966 kb on - strand, within HMPREF1058_RS18300 at 205.188 kb on + strand, within HMPREF1058_RS18300 at 205.218 kb on - strand, within HMPREF1058_RS18300 at 205.222 kb on - strand, within HMPREF1058_RS18300 at 205.338 kb on + strand, within HMPREF1058_RS18300 at 205.339 kb on - strand, within HMPREF1058_RS18300 at 205.470 kb on + strand, within HMPREF1058_RS18300 at 205.471 kb on - strand, within HMPREF1058_RS18300 at 205.471 kb on - strand at 205.609 kb on + strand at 205.714 kb on - strand at 205.752 kb on - strand at 205.752 kb on - strand at 205.772 kb on + strand at 205.848 kb on + strand at 205.978 kb on + strand at 205.979 kb on - strand at 205.979 kb on - strand at 205.979 kb on - strand at 205.979 kb on - strand at 205.980 kb on + strand at 205.981 kb on - strand at 205.983 kb on + strand at 205.983 kb on + strand at 205.987 kb on + strand at 206.002 kb on - strand at 206.078 kb on + strand at 206.078 kb on + strand at 206.078 kb on + strand at 206.082 kb on + strand at 206.083 kb on - strand at 206.097 kb on + strand at 206.097 kb on + strand at 206.202 kb on + strand, within HMPREF1058_RS18295 at 206.203 kb on - strand, within HMPREF1058_RS18295 at 206.204 kb on + strand, within HMPREF1058_RS18295 at 206.224 kb on + strand, within HMPREF1058_RS18295 at 206.323 kb on + strand, within HMPREF1058_RS18295 at 206.324 kb on - strand, within HMPREF1058_RS18295 at 206.324 kb on - strand, within HMPREF1058_RS18295 at 206.324 kb on - strand, within HMPREF1058_RS18295 at 206.420 kb on + strand, within HMPREF1058_RS18295 at 206.603 kb on + strand, within HMPREF1058_RS18295 at 206.603 kb on + strand, within HMPREF1058_RS18295 at 206.719 kb on - strand, within HMPREF1058_RS18295 at 206.858 kb on + strand, within HMPREF1058_RS18295 at 206.858 kb on + strand, within HMPREF1058_RS18295 at 206.859 kb on - strand at 206.902 kb on - strand, within HMPREF1058_RS18295 at 206.902 kb on - strand, within HMPREF1058_RS18295 at 206.902 kb on - strand, within HMPREF1058_RS18295 at 207.198 kb on - strand, within HMPREF1058_RS18295 at 207.339 kb on - strand at 207.358 kb on - strand, within HMPREF1058_RS18295 at 207.379 kb on + strand, within HMPREF1058_RS18295 at 207.414 kb on + strand, within HMPREF1058_RS18295 at 207.414 kb on + strand, within HMPREF1058_RS18295 at 207.415 kb on - strand, within HMPREF1058_RS18295 at 207.416 kb on + strand, within HMPREF1058_RS18295 at 207.416 kb on + strand, within HMPREF1058_RS18295 at 207.416 kb on + strand, within HMPREF1058_RS18295 at 207.417 kb on - strand, within HMPREF1058_RS18295 at 207.417 kb on - strand, within HMPREF1058_RS18295 at 207.420 kb on + strand, within HMPREF1058_RS18295 at 207.425 kb on + strand, within HMPREF1058_RS18295 at 207.425 kb on + strand, within HMPREF1058_RS18295 at 207.426 kb on - strand, within HMPREF1058_RS18295 at 207.426 kb on - strand, within HMPREF1058_RS18295 at 207.518 kb on - strand, within HMPREF1058_RS18295 at 207.518 kb on - strand, within HMPREF1058_RS18295 at 207.582 kb on - strand, within HMPREF1058_RS18295 at 207.582 kb on - strand, within HMPREF1058_RS18295 at 207.600 kb on - strand, within HMPREF1058_RS18295 at 207.621 kb on - strand, within HMPREF1058_RS18295 at 207.643 kb on - strand, within HMPREF1058_RS18295 at 207.645 kb on - strand, within HMPREF1058_RS18295 at 207.669 kb on + strand, within HMPREF1058_RS18295 at 207.709 kb on - strand, within HMPREF1058_RS18295 at 207.710 kb on + strand, within HMPREF1058_RS18295 at 207.754 kb on + strand, within HMPREF1058_RS18295 at 207.754 kb on + strand, within HMPREF1058_RS18295 at 207.755 kb on - strand, within HMPREF1058_RS18295 at 207.786 kb on + strand, within HMPREF1058_RS18295 at 207.795 kb on + strand, within HMPREF1058_RS18295 at 207.795 kb on + strand, within HMPREF1058_RS18295 at 207.798 kb on - strand, within HMPREF1058_RS18295 at 207.853 kb on - strand, within HMPREF1058_RS18295 at 208.023 kb on + strand, within HMPREF1058_RS18295 at 208.027 kb on - strand, within HMPREF1058_RS18295 at 208.170 kb on - strand, within HMPREF1058_RS18295 at 208.288 kb on - strand, within HMPREF1058_RS18295 at 208.288 kb on - strand, within HMPREF1058_RS18295 at 208.300 kb on - strand, within HMPREF1058_RS18295 at 208.300 kb on - strand, within HMPREF1058_RS18295 at 208.323 kb on + strand, within HMPREF1058_RS18295 at 208.340 kb on + strand, within HMPREF1058_RS18295 at 208.354 kb on - strand, within HMPREF1058_RS18295 at 208.358 kb on + strand, within HMPREF1058_RS18295 at 208.376 kb on + strand, within HMPREF1058_RS18295 at 208.376 kb on + strand, within HMPREF1058_RS18295 at 208.377 kb on - strand, within HMPREF1058_RS18295 at 208.453 kb on - strand, within HMPREF1058_RS18295 at 208.481 kb on + strand, within HMPREF1058_RS18295 at 208.481 kb on + strand, within HMPREF1058_RS18295 at 208.521 kb on + strand, within HMPREF1058_RS18295 at 208.643 kb on - strand, within HMPREF1058_RS18295 at 208.647 kb on + strand, within HMPREF1058_RS18295 at 208.651 kb on + strand, within HMPREF1058_RS18295 at 208.651 kb on + strand, within HMPREF1058_RS18295 at 208.652 kb on - strand, within HMPREF1058_RS18295 at 208.652 kb on - strand, within HMPREF1058_RS18295 at 208.960 kb on - strand, within HMPREF1058_RS18295 at 208.963 kb on - strand, within HMPREF1058_RS18295 at 208.966 kb on - strand, within HMPREF1058_RS18295 at 208.967 kb on + strand, within HMPREF1058_RS18295 at 209.176 kb on + strand, within HMPREF1058_RS18295 at 209.255 kb on + strand, within HMPREF1058_RS18295 at 209.256 kb on - strand, within HMPREF1058_RS18295 at 209.256 kb on - strand, within HMPREF1058_RS18295 at 209.260 kb on - strand, within HMPREF1058_RS18295 at 209.369 kb on - strand, within HMPREF1058_RS18295 at 209.440 kb on - strand, within HMPREF1058_RS18295 at 209.535 kb on - strand, within HMPREF1058_RS18295 at 209.557 kb on - strand, within HMPREF1058_RS18295 at 209.559 kb on - strand, within HMPREF1058_RS18295 at 209.595 kb on + strand, within HMPREF1058_RS18295 at 209.648 kb on - strand, within HMPREF1058_RS18295 at 209.777 kb on + strand at 209.817 kb on - strand at 209.817 kb on - strand at 209.845 kb on + strand at 209.845 kb on + strand at 209.846 kb on - strand at 209.847 kb on + strand at 209.847 kb on + strand at 209.847 kb on + strand at 209.847 kb on + strand at 209.848 kb on - strand at 209.848 kb on - strand at 209.848 kb on - strand at 209.869 kb on + strand at 209.954 kb on - strand at 209.954 kb on - strand at 209.954 kb on - strand at 210.044 kb on + strand at 210.045 kb on - strand at 210.060 kb on + strand at 210.069 kb on + strand at 210.070 kb on - strand at 210.070 kb on - strand at 210.071 kb on + strand at 210.106 kb on + strand at 210.115 kb on + strand at 210.115 kb on + strand at 210.115 kb on + strand at 210.118 kb on - strand at 210.119 kb on + strand at 210.120 kb on - strand at 210.137 kb on + strand at 210.202 kb on - strand at 210.251 kb on + strand at 210.252 kb on - strand at 210.256 kb on + strand at 210.256 kb on + strand at 210.456 kb on + strand at 210.625 kb on - strand, within HMPREF1058_RS18290 at 210.630 kb on - strand, within HMPREF1058_RS18290 at 210.672 kb on - strand, within HMPREF1058_RS18290 at 210.748 kb on + strand, within HMPREF1058_RS18290 at 210.749 kb on - strand, within HMPREF1058_RS18290 at 210.752 kb on + strand, within HMPREF1058_RS18290 at 210.753 kb on - strand, within HMPREF1058_RS18290 at 210.833 kb on + strand, within HMPREF1058_RS18290 at 210.834 kb on - strand at 210.863 kb on - strand, within HMPREF1058_RS18290 at 210.866 kb on + strand, within HMPREF1058_RS18290 at 211.127 kb on - strand, within HMPREF1058_RS18290
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 204,811 - HMPREF1058_RS18300 0.15 +0.1 204,811 - HMPREF1058_RS18300 0.15 -3.0 204,846 - HMPREF1058_RS18300 0.19 +0.1 204,873 + HMPREF1058_RS18300 0.22 +0.7 204,880 + HMPREF1058_RS18300 0.23 +0.6 204,966 - HMPREF1058_RS18300 0.33 -0.3 205,188 + HMPREF1058_RS18300 0.58 -1.4 205,218 - HMPREF1058_RS18300 0.61 -0.4 205,222 - HMPREF1058_RS18300 0.62 -0.7 205,338 + HMPREF1058_RS18300 0.75 -1.1 205,339 - HMPREF1058_RS18300 0.75 -0.1 205,470 + HMPREF1058_RS18300 0.90 +1.2 205,471 - HMPREF1058_RS18300 0.90 -1.9 205,471 - -0.8 205,609 + -2.1 205,714 - -1.9 205,752 - -1.2 205,752 - +1.1 205,772 + -0.3 205,848 + -1.8 205,978 + +1.7 205,979 - +0.4 205,979 - -2.1 205,979 - -0.4 205,979 - -0.1 205,980 + +0.7 205,981 - -3.0 205,983 + -1.0 205,983 + -0.8 205,987 + -2.3 206,002 - -0.7 206,078 + -1.8 206,078 + -0.8 206,078 + -2.4 206,082 + -2.5 206,083 - -1.8 206,097 + -1.2 206,097 + -2.1 206,202 + HMPREF1058_RS18295 0.11 -1.5 206,203 - HMPREF1058_RS18295 0.11 +1.5 206,204 + HMPREF1058_RS18295 0.11 -4.1 206,224 + HMPREF1058_RS18295 0.11 -0.5 206,323 + HMPREF1058_RS18295 0.14 +1.7 206,324 - HMPREF1058_RS18295 0.14 -1.6 206,324 - HMPREF1058_RS18295 0.14 -0.6 206,324 - HMPREF1058_RS18295 0.14 -3.2 206,420 + HMPREF1058_RS18295 0.16 +0.1 206,603 + HMPREF1058_RS18295 0.20 -1.4 206,603 + HMPREF1058_RS18295 0.20 -1.3 206,719 - HMPREF1058_RS18295 0.23 -0.3 206,858 + HMPREF1058_RS18295 0.26 -0.8 206,858 + HMPREF1058_RS18295 0.26 -3.0 206,859 - -0.2 206,902 - HMPREF1058_RS18295 0.27 -1.2 206,902 - HMPREF1058_RS18295 0.27 +1.7 206,902 - HMPREF1058_RS18295 0.27 -1.2 207,198 - HMPREF1058_RS18295 0.33 -3.2 207,339 - +0.3 207,358 - HMPREF1058_RS18295 0.37 -1.2 207,379 + HMPREF1058_RS18295 0.38 -1.6 207,414 + HMPREF1058_RS18295 0.38 -1.4 207,414 + HMPREF1058_RS18295 0.38 -0.3 207,415 - HMPREF1058_RS18295 0.38 +1.5 207,416 + HMPREF1058_RS18295 0.38 -0.5 207,416 + HMPREF1058_RS18295 0.38 +1.4 207,416 + HMPREF1058_RS18295 0.38 -0.1 207,417 - HMPREF1058_RS18295 0.38 -2.9 207,417 - HMPREF1058_RS18295 0.38 -0.5 207,420 + HMPREF1058_RS18295 0.38 -0.6 207,425 + HMPREF1058_RS18295 0.39 +0.2 207,425 + HMPREF1058_RS18295 0.39 -1.0 207,426 - HMPREF1058_RS18295 0.39 -0.8 207,426 - HMPREF1058_RS18295 0.39 -1.9 207,518 - HMPREF1058_RS18295 0.41 -1.4 207,518 - HMPREF1058_RS18295 0.41 -0.9 207,582 - HMPREF1058_RS18295 0.42 -0.3 207,582 - HMPREF1058_RS18295 0.42 -1.3 207,600 - HMPREF1058_RS18295 0.43 -0.8 207,621 - HMPREF1058_RS18295 0.43 -1.9 207,643 - HMPREF1058_RS18295 0.44 -2.1 207,645 - HMPREF1058_RS18295 0.44 -1.6 207,669 + HMPREF1058_RS18295 0.44 -0.8 207,709 - HMPREF1058_RS18295 0.45 +0.7 207,710 + HMPREF1058_RS18295 0.45 -1.0 207,754 + HMPREF1058_RS18295 0.46 -0.9 207,754 + HMPREF1058_RS18295 0.46 -0.6 207,755 - HMPREF1058_RS18295 0.46 -3.7 207,786 + HMPREF1058_RS18295 0.47 -2.2 207,795 + HMPREF1058_RS18295 0.47 +1.1 207,795 + HMPREF1058_RS18295 0.47 -3.8 207,798 - HMPREF1058_RS18295 0.47 -1.8 207,853 - HMPREF1058_RS18295 0.48 -1.0 208,023 + HMPREF1058_RS18295 0.52 -2.8 208,027 - HMPREF1058_RS18295 0.52 -1.3 208,170 - HMPREF1058_RS18295 0.55 -0.4 208,288 - HMPREF1058_RS18295 0.58 -0.3 208,288 - HMPREF1058_RS18295 0.58 +2.7 208,300 - HMPREF1058_RS18295 0.58 -1.7 208,300 - HMPREF1058_RS18295 0.58 -2.7 208,323 + HMPREF1058_RS18295 0.59 -1.2 208,340 + HMPREF1058_RS18295 0.59 -1.3 208,354 - HMPREF1058_RS18295 0.60 -0.7 208,358 + HMPREF1058_RS18295 0.60 -0.5 208,376 + HMPREF1058_RS18295 0.60 -2.4 208,376 + HMPREF1058_RS18295 0.60 -0.8 208,377 - HMPREF1058_RS18295 0.60 -0.5 208,453 - HMPREF1058_RS18295 0.62 -1.0 208,481 + HMPREF1058_RS18295 0.63 -1.6 208,481 + HMPREF1058_RS18295 0.63 -1.3 208,521 + HMPREF1058_RS18295 0.63 -2.0 208,643 - HMPREF1058_RS18295 0.66 -2.3 208,647 + HMPREF1058_RS18295 0.66 -0.9 208,651 + HMPREF1058_RS18295 0.66 -1.5 208,651 + HMPREF1058_RS18295 0.66 -0.7 208,652 - HMPREF1058_RS18295 0.66 -1.7 208,652 - HMPREF1058_RS18295 0.66 -0.8 208,960 - HMPREF1058_RS18295 0.73 -2.2 208,963 - HMPREF1058_RS18295 0.74 -0.7 208,966 - HMPREF1058_RS18295 0.74 -2.2 208,967 + HMPREF1058_RS18295 0.74 -0.3 209,176 + HMPREF1058_RS18295 0.78 -3.7 209,255 + HMPREF1058_RS18295 0.80 -1.2 209,256 - HMPREF1058_RS18295 0.80 -0.1 209,256 - HMPREF1058_RS18295 0.80 -0.3 209,260 - HMPREF1058_RS18295 0.80 -3.8 209,369 - HMPREF1058_RS18295 0.83 -0.7 209,440 - HMPREF1058_RS18295 0.84 -0.7 209,535 - HMPREF1058_RS18295 0.86 -2.2 209,557 - HMPREF1058_RS18295 0.87 +0.1 209,559 - HMPREF1058_RS18295 0.87 -0.9 209,595 + HMPREF1058_RS18295 0.88 -1.3 209,648 - HMPREF1058_RS18295 0.89 -1.8 209,777 + -1.4 209,817 - -0.8 209,817 - +0.1 209,845 + -1.7 209,845 + -1.2 209,846 - -0.4 209,847 + +0.1 209,847 + +1.7 209,847 + -1.9 209,847 + -3.0 209,848 - -1.9 209,848 - -0.3 209,848 - -0.0 209,869 + -0.8 209,954 - -2.6 209,954 - -0.5 209,954 - -2.3 210,044 + +1.0 210,045 - +1.7 210,060 + +0.6 210,069 + -0.2 210,070 - -2.8 210,070 - +1.7 210,071 + -2.0 210,106 + -2.8 210,115 + -2.1 210,115 + +0.3 210,115 + -0.7 210,118 - -0.6 210,119 + -0.9 210,120 - -0.7 210,137 + -2.0 210,202 - +0.4 210,251 + +0.5 210,252 - +1.2 210,256 + -2.4 210,256 + -1.7 210,456 + -0.3 210,625 - HMPREF1058_RS18290 0.14 -0.3 210,630 - HMPREF1058_RS18290 0.14 +2.7 210,672 - HMPREF1058_RS18290 0.16 -0.5 210,748 + HMPREF1058_RS18290 0.19 -1.8 210,749 - HMPREF1058_RS18290 0.19 +1.1 210,752 + HMPREF1058_RS18290 0.19 +0.6 210,753 - HMPREF1058_RS18290 0.19 -1.2 210,833 + HMPREF1058_RS18290 0.22 -0.1 210,834 - +3.0 210,863 - HMPREF1058_RS18290 0.23 -1.6 210,866 + HMPREF1058_RS18290 0.23 -0.7 211,127 - HMPREF1058_RS18290 0.33 -0.3
Or see this region's nucleotide sequence