Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18210 and HMPREF1058_RS18205 are separated by 120 nucleotides HMPREF1058_RS18205 and HMPREF1058_RS18200 are separated by 312 nucleotides HMPREF1058_RS18200 and HMPREF1058_RS18195 are separated by 129 nucleotides
HMPREF1058_RS18210: HMPREF1058_RS18210 - tRNA lysidine(34) synthetase TilS, at 232,784 to 234,088
_RS18210
HMPREF1058_RS18205: HMPREF1058_RS18205 - ferrous iron transport protein B, at 234,209 to 236,677
_RS18205
HMPREF1058_RS18200: HMPREF1058_RS18200 - tRNA-Cys, at 236,990 to 237,061
_RS18200
HMPREF1058_RS18195: HMPREF1058_RS18195 - IS1182 family transposase, at 237,191 to 238,846
_RS18195
Position (kb) 234
235
236
237 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 234.100 kb on - strand at 234.304 kb on + strand at 234.556 kb on + strand, within HMPREF1058_RS18205 at 234.562 kb on + strand at 234.562 kb on + strand, within HMPREF1058_RS18205 at 234.723 kb on - strand, within HMPREF1058_RS18205 at 234.815 kb on - strand, within HMPREF1058_RS18205 at 234.952 kb on - strand, within HMPREF1058_RS18205 at 234.981 kb on + strand, within HMPREF1058_RS18205 at 235.156 kb on + strand, within HMPREF1058_RS18205 at 235.156 kb on + strand, within HMPREF1058_RS18205 at 235.156 kb on + strand, within HMPREF1058_RS18205 at 235.318 kb on + strand, within HMPREF1058_RS18205 at 235.598 kb on - strand, within HMPREF1058_RS18205 at 235.651 kb on + strand, within HMPREF1058_RS18205 at 235.690 kb on + strand, within HMPREF1058_RS18205 at 235.693 kb on + strand, within HMPREF1058_RS18205 at 235.847 kb on - strand, within HMPREF1058_RS18205 at 235.874 kb on - strand, within HMPREF1058_RS18205 at 235.978 kb on - strand, within HMPREF1058_RS18205 at 235.984 kb on - strand, within HMPREF1058_RS18205 at 236.143 kb on + strand, within HMPREF1058_RS18205 at 236.173 kb on + strand, within HMPREF1058_RS18205 at 236.513 kb on + strand at 236.730 kb on - strand at 236.731 kb on + strand at 236.736 kb on - strand at 236.746 kb on + strand at 236.773 kb on + strand at 236.774 kb on - strand at 236.811 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 234,100 - -2.3 234,304 + -0.8 234,556 + HMPREF1058_RS18205 0.14 -2.0 234,562 + +0.3 234,562 + HMPREF1058_RS18205 0.14 -0.2 234,723 - HMPREF1058_RS18205 0.21 -0.3 234,815 - HMPREF1058_RS18205 0.25 +0.3 234,952 - HMPREF1058_RS18205 0.30 -1.0 234,981 + HMPREF1058_RS18205 0.31 +1.1 235,156 + HMPREF1058_RS18205 0.38 +1.7 235,156 + HMPREF1058_RS18205 0.38 +0.1 235,156 + HMPREF1058_RS18205 0.38 +1.1 235,318 + HMPREF1058_RS18205 0.45 -1.5 235,598 - HMPREF1058_RS18205 0.56 +2.7 235,651 + HMPREF1058_RS18205 0.58 -0.3 235,690 + HMPREF1058_RS18205 0.60 -3.1 235,693 + HMPREF1058_RS18205 0.60 -3.2 235,847 - HMPREF1058_RS18205 0.66 -2.3 235,874 - HMPREF1058_RS18205 0.67 -1.0 235,978 - HMPREF1058_RS18205 0.72 +0.3 235,984 - HMPREF1058_RS18205 0.72 +1.7 236,143 + HMPREF1058_RS18205 0.78 +0.3 236,173 + HMPREF1058_RS18205 0.80 -0.9 236,513 + +2.7 236,730 - -0.3 236,731 + +1.0 236,736 - +0.1 236,746 + +0.8 236,773 + -1.9 236,774 - -0.1 236,811 - -0.1
Or see this region's nucleotide sequence