Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17885 and HMPREF1058_RS17880 are separated by 21 nucleotides HMPREF1058_RS17880 and HMPREF1058_RS17875 are separated by 93 nucleotides HMPREF1058_RS17875 and HMPREF1058_RS17870 are separated by 208 nucleotides
HMPREF1058_RS17885: HMPREF1058_RS17885 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 308,058 to 310,271
_RS17885
HMPREF1058_RS17880: HMPREF1058_RS17880 - diacylglycerol kinase family protein, at 310,293 to 310,646
_RS17880
HMPREF1058_RS17875: HMPREF1058_RS17875 - DUF1573 domain-containing protein, at 310,740 to 311,153
_RS17875
HMPREF1058_RS17870: HMPREF1058_RS17870 - metallophosphoesterase, at 311,362 to 312,168
_RS17870
HMPREF1058_RS17865: HMPREF1058_RS17865 - hypothetical protein, at 312,134 to 312,895
_RS17865
Position (kb) 310
311
312 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 309.758 kb on + strand, within HMPREF1058_RS17885 at 309.885 kb on - strand, within HMPREF1058_RS17885 at 309.890 kb on + strand, within HMPREF1058_RS17885 at 309.891 kb on - strand, within HMPREF1058_RS17885 at 309.894 kb on + strand, within HMPREF1058_RS17885 at 309.895 kb on - strand, within HMPREF1058_RS17885 at 309.907 kb on + strand, within HMPREF1058_RS17885 at 309.908 kb on - strand, within HMPREF1058_RS17885 at 309.962 kb on + strand, within HMPREF1058_RS17885 at 310.078 kb on + strand at 310.078 kb on + strand at 310.094 kb on + strand at 310.094 kb on + strand at 310.192 kb on + strand at 310.199 kb on + strand at 310.223 kb on - strand at 310.286 kb on + strand at 310.286 kb on + strand at 310.325 kb on + strand at 310.329 kb on + strand, within HMPREF1058_RS17880 at 310.432 kb on + strand, within HMPREF1058_RS17880 at 310.478 kb on - strand, within HMPREF1058_RS17880 at 310.547 kb on + strand, within HMPREF1058_RS17880 at 310.709 kb on + strand at 310.738 kb on + strand at 310.738 kb on + strand at 310.738 kb on + strand at 310.765 kb on + strand at 310.766 kb on - strand at 310.777 kb on + strand at 310.851 kb on - strand, within HMPREF1058_RS17875 at 310.851 kb on - strand, within HMPREF1058_RS17875 at 311.026 kb on - strand, within HMPREF1058_RS17875 at 311.026 kb on - strand, within HMPREF1058_RS17875 at 311.028 kb on - strand, within HMPREF1058_RS17875 at 311.114 kb on - strand at 311.167 kb on + strand at 311.167 kb on + strand at 311.181 kb on + strand at 311.211 kb on - strand at 311.211 kb on - strand at 311.224 kb on - strand at 311.262 kb on + strand at 311.448 kb on + strand, within HMPREF1058_RS17870 at 311.448 kb on + strand, within HMPREF1058_RS17870 at 311.449 kb on - strand, within HMPREF1058_RS17870 at 311.449 kb on - strand, within HMPREF1058_RS17870 at 311.449 kb on - strand, within HMPREF1058_RS17870 at 311.449 kb on - strand, within HMPREF1058_RS17870 at 311.449 kb on - strand, within HMPREF1058_RS17870 at 311.558 kb on - strand, within HMPREF1058_RS17870 at 311.579 kb on + strand, within HMPREF1058_RS17870 at 311.679 kb on - strand, within HMPREF1058_RS17870 at 311.679 kb on - strand, within HMPREF1058_RS17870 at 311.701 kb on + strand, within HMPREF1058_RS17870 at 311.705 kb on + strand at 311.705 kb on + strand, within HMPREF1058_RS17870 at 311.706 kb on - strand, within HMPREF1058_RS17870 at 311.706 kb on - strand, within HMPREF1058_RS17870 at 311.836 kb on + strand, within HMPREF1058_RS17870 at 312.023 kb on - strand, within HMPREF1058_RS17870 at 312.057 kb on - strand, within HMPREF1058_RS17870 at 312.096 kb on - strand at 312.109 kb on + strand at 312.113 kb on + strand at 312.113 kb on + strand at 312.114 kb on - strand at 312.114 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 309,758 + HMPREF1058_RS17885 0.77 -0.8 309,885 - HMPREF1058_RS17885 0.83 -1.0 309,890 + HMPREF1058_RS17885 0.83 -0.4 309,891 - HMPREF1058_RS17885 0.83 +0.9 309,894 + HMPREF1058_RS17885 0.83 -0.9 309,895 - HMPREF1058_RS17885 0.83 +0.3 309,907 + HMPREF1058_RS17885 0.84 -0.7 309,908 - HMPREF1058_RS17885 0.84 -1.6 309,962 + HMPREF1058_RS17885 0.86 -2.6 310,078 + -2.6 310,078 + -2.3 310,094 + -1.5 310,094 + -1.5 310,192 + +0.2 310,199 + -0.5 310,223 - -0.3 310,286 + +1.1 310,286 + -0.8 310,325 + -0.4 310,329 + HMPREF1058_RS17880 0.10 -0.4 310,432 + HMPREF1058_RS17880 0.39 +0.7 310,478 - HMPREF1058_RS17880 0.52 -0.0 310,547 + HMPREF1058_RS17880 0.72 -1.4 310,709 + +0.3 310,738 + +1.7 310,738 + -0.6 310,738 + +0.2 310,765 + -0.1 310,766 - -0.9 310,777 + -0.4 310,851 - HMPREF1058_RS17875 0.27 -1.6 310,851 - HMPREF1058_RS17875 0.27 -2.4 311,026 - HMPREF1058_RS17875 0.69 -0.8 311,026 - HMPREF1058_RS17875 0.69 +0.3 311,028 - HMPREF1058_RS17875 0.70 +1.7 311,114 - -0.8 311,167 + +1.2 311,167 + +0.9 311,181 + -1.6 311,211 - -0.7 311,211 - +0.3 311,224 - +0.3 311,262 + +0.5 311,448 + HMPREF1058_RS17870 0.11 -0.7 311,448 + HMPREF1058_RS17870 0.11 -0.4 311,449 - HMPREF1058_RS17870 0.11 -1.3 311,449 - HMPREF1058_RS17870 0.11 -0.0 311,449 - HMPREF1058_RS17870 0.11 +0.4 311,449 - HMPREF1058_RS17870 0.11 -0.7 311,449 - HMPREF1058_RS17870 0.11 +0.6 311,558 - HMPREF1058_RS17870 0.24 -1.2 311,579 + HMPREF1058_RS17870 0.27 -1.3 311,679 - HMPREF1058_RS17870 0.39 +0.7 311,679 - HMPREF1058_RS17870 0.39 -1.4 311,701 + HMPREF1058_RS17870 0.42 -0.2 311,705 + +0.2 311,705 + HMPREF1058_RS17870 0.43 +0.5 311,706 - HMPREF1058_RS17870 0.43 +1.0 311,706 - HMPREF1058_RS17870 0.43 +0.8 311,836 + HMPREF1058_RS17870 0.59 +0.7 312,023 - HMPREF1058_RS17870 0.82 -0.2 312,057 - HMPREF1058_RS17870 0.86 +1.2 312,096 - +1.0 312,109 + -0.3 312,113 + +1.3 312,113 + -1.2 312,114 - -1.5 312,114 - -3.0
Or see this region's nucleotide sequence