Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17730

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS17735 and HMPREF1058_RS17730 are separated by 51 nucleotidesHMPREF1058_RS17730 and HMPREF1058_RS17725 are separated by 319 nucleotides HMPREF1058_RS17735: HMPREF1058_RS17735 - family 78 glycoside hydrolase catalytic domain, at 349,741 to 352,494 _RS17735 HMPREF1058_RS17730: HMPREF1058_RS17730 - hypothetical protein, at 352,546 to 355,857 _RS17730 HMPREF1058_RS17725: HMPREF1058_RS17725 - hypothetical protein, at 356,177 to 358,288 _RS17725 Position (kb) 352 353 354 355 356Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 351.566 kb on + strand, within HMPREF1058_RS17735at 351.567 kb on - strand, within HMPREF1058_RS17735at 351.794 kb on + strand, within HMPREF1058_RS17735at 351.795 kb on - strand, within HMPREF1058_RS17735at 351.801 kb on + strand, within HMPREF1058_RS17735at 351.801 kb on + strand, within HMPREF1058_RS17735at 351.802 kb on - strand, within HMPREF1058_RS17735at 351.806 kb on + strand, within HMPREF1058_RS17735at 351.901 kb on + strand, within HMPREF1058_RS17735at 351.901 kb on + strand, within HMPREF1058_RS17735at 351.901 kb on + strand, within HMPREF1058_RS17735at 351.901 kb on + strand, within HMPREF1058_RS17735at 351.902 kb on - strand, within HMPREF1058_RS17735at 351.906 kb on - strand, within HMPREF1058_RS17735at 351.906 kb on - strand, within HMPREF1058_RS17735at 351.906 kb on - strand, within HMPREF1058_RS17735at 351.960 kb on + strand, within HMPREF1058_RS17735at 351.960 kb on + strand, within HMPREF1058_RS17735at 351.961 kb on - strand, within HMPREF1058_RS17735at 352.035 kb on - strand, within HMPREF1058_RS17735at 352.191 kb on + strand, within HMPREF1058_RS17735at 352.191 kb on + strand, within HMPREF1058_RS17735at 352.277 kb on - strandat 352.291 kb on + strandat 352.291 kb on + strandat 352.426 kb on + strandat 352.613 kb on + strandat 352.614 kb on - strandat 352.781 kb on - strandat 352.812 kb on + strandat 352.813 kb on - strandat 352.888 kb on + strand, within HMPREF1058_RS17730at 352.892 kb on + strand, within HMPREF1058_RS17730at 352.947 kb on - strand, within HMPREF1058_RS17730at 352.947 kb on - strand, within HMPREF1058_RS17730at 352.977 kb on - strand, within HMPREF1058_RS17730at 352.980 kb on + strand, within HMPREF1058_RS17730at 352.980 kb on + strand, within HMPREF1058_RS17730at 353.055 kb on + strand, within HMPREF1058_RS17730at 353.055 kb on + strand, within HMPREF1058_RS17730at 353.055 kb on + strand, within HMPREF1058_RS17730at 353.056 kb on - strand, within HMPREF1058_RS17730at 353.059 kb on + strand, within HMPREF1058_RS17730at 353.104 kb on - strand, within HMPREF1058_RS17730at 353.205 kb on - strand, within HMPREF1058_RS17730at 353.205 kb on - strand, within HMPREF1058_RS17730at 353.221 kb on + strand, within HMPREF1058_RS17730at 353.391 kb on - strand, within HMPREF1058_RS17730at 353.391 kb on - strand, within HMPREF1058_RS17730at 353.391 kb on - strand, within HMPREF1058_RS17730at 353.395 kb on - strand, within HMPREF1058_RS17730at 353.395 kb on - strand, within HMPREF1058_RS17730at 353.396 kb on + strand, within HMPREF1058_RS17730at 353.396 kb on + strand, within HMPREF1058_RS17730at 353.586 kb on - strand, within HMPREF1058_RS17730at 353.691 kb on - strand, within HMPREF1058_RS17730at 353.721 kb on - strand, within HMPREF1058_RS17730at 353.725 kb on - strand, within HMPREF1058_RS17730at 353.757 kb on - strand, within HMPREF1058_RS17730at 353.855 kb on + strand, within HMPREF1058_RS17730at 353.948 kb on - strand, within HMPREF1058_RS17730at 353.976 kb on - strand, within HMPREF1058_RS17730at 353.984 kb on + strand, within HMPREF1058_RS17730at 354.061 kb on - strand, within HMPREF1058_RS17730at 354.126 kb on + strand, within HMPREF1058_RS17730at 354.204 kb on + strand, within HMPREF1058_RS17730at 354.205 kb on - strand, within HMPREF1058_RS17730at 354.205 kb on - strand, within HMPREF1058_RS17730at 354.233 kb on + strand, within HMPREF1058_RS17730at 354.274 kb on + strand, within HMPREF1058_RS17730at 354.299 kb on + strand, within HMPREF1058_RS17730at 354.300 kb on - strand, within HMPREF1058_RS17730at 354.312 kb on + strand, within HMPREF1058_RS17730at 354.481 kb on - strand, within HMPREF1058_RS17730at 354.663 kb on + strand, within HMPREF1058_RS17730at 354.664 kb on - strand, within HMPREF1058_RS17730at 354.664 kb on - strand, within HMPREF1058_RS17730at 354.678 kb on + strand, within HMPREF1058_RS17730at 354.678 kb on + strand, within HMPREF1058_RS17730at 354.679 kb on - strand, within HMPREF1058_RS17730at 354.693 kb on + strand, within HMPREF1058_RS17730at 354.694 kb on - strand, within HMPREF1058_RS17730at 354.759 kb on - strand, within HMPREF1058_RS17730at 354.777 kb on + strand, within HMPREF1058_RS17730at 354.779 kb on + strand, within HMPREF1058_RS17730at 354.835 kb on - strand, within HMPREF1058_RS17730at 354.894 kb on + strand, within HMPREF1058_RS17730at 354.896 kb on + strand, within HMPREF1058_RS17730at 354.897 kb on - strand, within HMPREF1058_RS17730at 354.909 kb on - strand, within HMPREF1058_RS17730at 354.909 kb on - strand, within HMPREF1058_RS17730at 355.065 kb on + strand, within HMPREF1058_RS17730at 355.066 kb on - strand, within HMPREF1058_RS17730at 355.077 kb on - strand, within HMPREF1058_RS17730at 355.077 kb on - strand, within HMPREF1058_RS17730at 355.228 kb on - strandat 355.256 kb on + strand, within HMPREF1058_RS17730at 355.265 kb on + strand, within HMPREF1058_RS17730at 355.265 kb on + strand, within HMPREF1058_RS17730at 355.364 kb on + strand, within HMPREF1058_RS17730at 355.365 kb on - strand, within HMPREF1058_RS17730at 355.403 kb on + strand, within HMPREF1058_RS17730at 355.403 kb on + strand, within HMPREF1058_RS17730at 355.403 kb on + strand, within HMPREF1058_RS17730at 355.471 kb on - strand, within HMPREF1058_RS17730at 355.605 kb on - strandat 355.646 kb on + strandat 355.707 kb on + strandat 355.708 kb on - strandat 355.714 kb on + strandat 355.752 kb on + strandat 355.758 kb on + strandat 355.777 kb on - strandat 355.779 kb on - strandat 355.779 kb on - strandat 355.784 kb on - strandat 355.789 kb on - strandat 355.789 kb on - strandat 355.836 kb on + strandat 355.837 kb on - strandat 355.859 kb on + strandat 355.859 kb on + strandat 355.860 kb on - strandat 355.863 kb on + strandat 355.869 kb on + strandat 355.869 kb on + strandat 355.870 kb on - strandat 355.870 kb on - strandat 356.015 kb on - strandat 356.027 kb on - strandat 356.027 kb on - strandat 356.136 kb on - strandat 356.141 kb on - strandat 356.144 kb on + strandat 356.294 kb on - strandat 356.310 kb on + strandat 356.310 kb on + strandat 356.448 kb on + strand, within HMPREF1058_RS17725at 356.488 kb on - strand, within HMPREF1058_RS17725at 356.501 kb on + strand, within HMPREF1058_RS17725at 356.541 kb on + strand, within HMPREF1058_RS17725at 356.541 kb on + strand, within HMPREF1058_RS17725at 356.635 kb on + strand, within HMPREF1058_RS17725at 356.635 kb on + strand, within HMPREF1058_RS17725

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
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351,566 + HMPREF1058_RS17735 0.66 -1.9
351,567 - HMPREF1058_RS17735 0.66 -1.5
351,794 + HMPREF1058_RS17735 0.75 +0.5
351,795 - HMPREF1058_RS17735 0.75 +0.6
351,801 + HMPREF1058_RS17735 0.75 -1.8
351,801 + HMPREF1058_RS17735 0.75 -0.8
351,802 - HMPREF1058_RS17735 0.75 +0.3
351,806 + HMPREF1058_RS17735 0.75 -1.3
351,901 + HMPREF1058_RS17735 0.78 -0.1
351,901 + HMPREF1058_RS17735 0.78 -0.0
351,901 + HMPREF1058_RS17735 0.78 -1.8
351,901 + HMPREF1058_RS17735 0.78 +0.9
351,902 - HMPREF1058_RS17735 0.78 +0.0
351,906 - HMPREF1058_RS17735 0.79 -0.6
351,906 - HMPREF1058_RS17735 0.79 -2.6
351,906 - HMPREF1058_RS17735 0.79 -1.1
351,960 + HMPREF1058_RS17735 0.81 +1.1
351,960 + HMPREF1058_RS17735 0.81 +0.0
351,961 - HMPREF1058_RS17735 0.81 +1.6
352,035 - HMPREF1058_RS17735 0.83 -0.7
352,191 + HMPREF1058_RS17735 0.89 +0.2
352,191 + HMPREF1058_RS17735 0.89 +0.0
352,277 - -2.4
352,291 + -3.7
352,291 + -0.8
352,426 + -1.4
352,613 + -1.6
352,614 - +0.0
352,781 - -1.4
352,812 + -2.1
352,813 - +0.4
352,888 + HMPREF1058_RS17730 0.10 -3.1
352,892 + HMPREF1058_RS17730 0.10 -2.2
352,947 - HMPREF1058_RS17730 0.12 +2.7
352,947 - HMPREF1058_RS17730 0.12 -0.8
352,977 - HMPREF1058_RS17730 0.13 -2.0
352,980 + HMPREF1058_RS17730 0.13 -2.0
352,980 + HMPREF1058_RS17730 0.13 -0.9
353,055 + HMPREF1058_RS17730 0.15 +0.1
353,055 + HMPREF1058_RS17730 0.15 -0.6
353,055 + HMPREF1058_RS17730 0.15 -1.9
353,056 - HMPREF1058_RS17730 0.15 -0.5
353,059 + HMPREF1058_RS17730 0.15 -2.5
353,104 - HMPREF1058_RS17730 0.17 +2.7
353,205 - HMPREF1058_RS17730 0.20 -0.3
353,205 - HMPREF1058_RS17730 0.20 -1.5
353,221 + HMPREF1058_RS17730 0.20 +0.5
353,391 - HMPREF1058_RS17730 0.26 -0.2
353,391 - HMPREF1058_RS17730 0.26 -1.9
353,391 - HMPREF1058_RS17730 0.26 -3.1
353,395 - HMPREF1058_RS17730 0.26 -2.5
353,395 - HMPREF1058_RS17730 0.26 -0.3
353,396 + HMPREF1058_RS17730 0.26 +1.1
353,396 + HMPREF1058_RS17730 0.26 -1.9
353,586 - HMPREF1058_RS17730 0.31 -2.1
353,691 - HMPREF1058_RS17730 0.35 -1.0
353,721 - HMPREF1058_RS17730 0.35 +0.2
353,725 - HMPREF1058_RS17730 0.36 -1.5
353,757 - HMPREF1058_RS17730 0.37 -0.6
353,855 + HMPREF1058_RS17730 0.40 -1.6
353,948 - HMPREF1058_RS17730 0.42 -1.8
353,976 - HMPREF1058_RS17730 0.43 -0.0
353,984 + HMPREF1058_RS17730 0.43 -0.9
354,061 - HMPREF1058_RS17730 0.46 -0.4
354,126 + HMPREF1058_RS17730 0.48 -0.5
354,204 + HMPREF1058_RS17730 0.50 -2.5
354,205 - HMPREF1058_RS17730 0.50 +0.7
354,205 - HMPREF1058_RS17730 0.50 -2.0
354,233 + HMPREF1058_RS17730 0.51 -3.5
354,274 + HMPREF1058_RS17730 0.52 +1.9
354,299 + HMPREF1058_RS17730 0.53 -2.2
354,300 - HMPREF1058_RS17730 0.53 +0.5
354,312 + HMPREF1058_RS17730 0.53 -0.1
354,481 - HMPREF1058_RS17730 0.58 +1.2
354,663 + HMPREF1058_RS17730 0.64 -1.5
354,664 - HMPREF1058_RS17730 0.64 -2.3
354,664 - HMPREF1058_RS17730 0.64 +2.7
354,678 + HMPREF1058_RS17730 0.64 -0.8
354,678 + HMPREF1058_RS17730 0.64 -1.5
354,679 - HMPREF1058_RS17730 0.64 -0.1
354,693 + HMPREF1058_RS17730 0.65 -2.2
354,694 - HMPREF1058_RS17730 0.65 -1.5
354,759 - HMPREF1058_RS17730 0.67 -0.2
354,777 + HMPREF1058_RS17730 0.67 -2.3
354,779 + HMPREF1058_RS17730 0.67 -2.2
354,835 - HMPREF1058_RS17730 0.69 -0.5
354,894 + HMPREF1058_RS17730 0.71 -1.0
354,896 + HMPREF1058_RS17730 0.71 -0.6
354,897 - HMPREF1058_RS17730 0.71 -1.1
354,909 - HMPREF1058_RS17730 0.71 -0.1
354,909 - HMPREF1058_RS17730 0.71 -1.2
355,065 + HMPREF1058_RS17730 0.76 -0.5
355,066 - HMPREF1058_RS17730 0.76 -2.1
355,077 - HMPREF1058_RS17730 0.76 -0.4
355,077 - HMPREF1058_RS17730 0.76 +1.6
355,228 - -0.6
355,256 + HMPREF1058_RS17730 0.82 -1.9
355,265 + HMPREF1058_RS17730 0.82 -1.8
355,265 + HMPREF1058_RS17730 0.82 -1.8
355,364 + HMPREF1058_RS17730 0.85 -1.0
355,365 - HMPREF1058_RS17730 0.85 -2.1
355,403 + HMPREF1058_RS17730 0.86 +0.1
355,403 + HMPREF1058_RS17730 0.86 +0.1
355,403 + HMPREF1058_RS17730 0.86 -4.0
355,471 - HMPREF1058_RS17730 0.88 +0.3
355,605 - -0.0
355,646 + -0.5
355,707 + +0.8
355,708 - -0.1
355,714 + -2.5
355,752 + -0.1
355,758 + -1.0
355,777 - -0.3
355,779 - -1.2
355,779 - +0.7
355,784 - -1.1
355,789 - -2.0
355,789 - -1.3
355,836 + +1.0
355,837 - -1.4
355,859 + +0.0
355,859 + -2.2
355,860 - -2.3
355,863 + +1.1
355,869 + -0.9
355,869 + -1.8
355,870 - +0.7
355,870 - -2.5
356,015 - +2.7
356,027 - -1.2
356,027 - -1.5
356,136 - -0.9
356,141 - +0.1
356,144 + -1.3
356,294 - +0.5
356,310 + +0.0
356,310 + +2.3
356,448 + HMPREF1058_RS17725 0.13 -0.5
356,488 - HMPREF1058_RS17725 0.15 -1.2
356,501 + HMPREF1058_RS17725 0.15 +0.8
356,541 + HMPREF1058_RS17725 0.17 +0.4
356,541 + HMPREF1058_RS17725 0.17 -1.1
356,635 + HMPREF1058_RS17725 0.22 +1.9
356,635 + HMPREF1058_RS17725 0.22 +0.9

Or see this region's nucleotide sequence