Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16830 and HMPREF1058_RS16825 overlap by 1 nucleotides HMPREF1058_RS16825 and HMPREF1058_RS16820 are separated by 10 nucleotides HMPREF1058_RS16820 and HMPREF1058_RS16815 are separated by 99 nucleotides
HMPREF1058_RS16830: HMPREF1058_RS16830 - acyl-ACP thioesterase, at 585,186 to 585,929
_RS16830
HMPREF1058_RS16825: HMPREF1058_RS16825 - acetolactate synthase small subunit, at 585,929 to 586,483
_RS16825
HMPREF1058_RS16820: HMPREF1058_RS16820 - biosynthetic-type acetolactate synthase large subunit, at 586,494 to 588,191
_RS16820
HMPREF1058_RS16815: HMPREF1058_RS16815 - dihydroxy-acid dehydratase, at 588,291 to 590,093
_RS16815
Position (kb) 586
587
588
589 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 585.496 kb on - strand, within HMPREF1058_RS16830 at 585.497 kb on + strand, within HMPREF1058_RS16830 at 585.516 kb on + strand, within HMPREF1058_RS16830 at 585.520 kb on + strand, within HMPREF1058_RS16830 at 585.521 kb on - strand, within HMPREF1058_RS16830 at 585.521 kb on - strand, within HMPREF1058_RS16830 at 585.521 kb on - strand, within HMPREF1058_RS16830 at 585.531 kb on - strand, within HMPREF1058_RS16830 at 585.533 kb on + strand, within HMPREF1058_RS16830 at 585.657 kb on - strand, within HMPREF1058_RS16830 at 585.707 kb on - strand, within HMPREF1058_RS16830 at 585.719 kb on + strand, within HMPREF1058_RS16830 at 585.720 kb on - strand, within HMPREF1058_RS16830 at 585.732 kb on + strand, within HMPREF1058_RS16830 at 585.758 kb on + strand, within HMPREF1058_RS16830 at 585.759 kb on - strand, within HMPREF1058_RS16830 at 585.780 kb on - strand, within HMPREF1058_RS16830 at 585.901 kb on + strand at 586.003 kb on + strand, within HMPREF1058_RS16825 at 586.004 kb on - strand, within HMPREF1058_RS16825 at 586.079 kb on - strand, within HMPREF1058_RS16825 at 586.133 kb on + strand, within HMPREF1058_RS16825 at 586.148 kb on - strand, within HMPREF1058_RS16825 at 586.210 kb on - strand, within HMPREF1058_RS16825 at 586.230 kb on + strand, within HMPREF1058_RS16825 at 586.252 kb on - strand, within HMPREF1058_RS16825 at 586.252 kb on - strand, within HMPREF1058_RS16825 at 586.331 kb on - strand, within HMPREF1058_RS16825 at 586.333 kb on + strand, within HMPREF1058_RS16825 at 586.334 kb on - strand, within HMPREF1058_RS16825 at 586.334 kb on - strand, within HMPREF1058_RS16825 at 586.334 kb on - strand, within HMPREF1058_RS16825 at 586.337 kb on - strand, within HMPREF1058_RS16825 at 586.339 kb on - strand, within HMPREF1058_RS16825 at 586.442 kb on - strand at 586.466 kb on - strand at 586.466 kb on - strand at 586.467 kb on + strand at 586.469 kb on + strand at 586.469 kb on + strand at 586.470 kb on - strand at 586.483 kb on + strand at 586.491 kb on - strand at 586.495 kb on + strand at 586.687 kb on + strand, within HMPREF1058_RS16820 at 586.736 kb on + strand, within HMPREF1058_RS16820 at 586.864 kb on - strand, within HMPREF1058_RS16820 at 586.869 kb on + strand, within HMPREF1058_RS16820 at 586.895 kb on + strand, within HMPREF1058_RS16820 at 586.905 kb on - strand, within HMPREF1058_RS16820 at 586.951 kb on - strand, within HMPREF1058_RS16820 at 586.967 kb on + strand, within HMPREF1058_RS16820 at 586.967 kb on + strand, within HMPREF1058_RS16820 at 586.968 kb on - strand, within HMPREF1058_RS16820 at 587.125 kb on + strand, within HMPREF1058_RS16820 at 587.153 kb on + strand, within HMPREF1058_RS16820 at 587.174 kb on + strand, within HMPREF1058_RS16820 at 587.175 kb on - strand, within HMPREF1058_RS16820 at 587.202 kb on - strand, within HMPREF1058_RS16820 at 587.206 kb on - strand, within HMPREF1058_RS16820 at 587.211 kb on - strand, within HMPREF1058_RS16820 at 587.226 kb on + strand, within HMPREF1058_RS16820 at 587.308 kb on + strand, within HMPREF1058_RS16820 at 587.308 kb on + strand, within HMPREF1058_RS16820 at 587.308 kb on + strand, within HMPREF1058_RS16820 at 587.308 kb on + strand, within HMPREF1058_RS16820 at 587.308 kb on + strand, within HMPREF1058_RS16820 at 587.309 kb on + strand, within HMPREF1058_RS16820 at 587.309 kb on - strand, within HMPREF1058_RS16820 at 587.309 kb on - strand, within HMPREF1058_RS16820 at 587.309 kb on - strand, within HMPREF1058_RS16820 at 587.348 kb on + strand, within HMPREF1058_RS16820 at 587.411 kb on + strand, within HMPREF1058_RS16820 at 587.412 kb on - strand, within HMPREF1058_RS16820 at 587.431 kb on - strand, within HMPREF1058_RS16820 at 587.500 kb on - strand, within HMPREF1058_RS16820 at 587.512 kb on - strand, within HMPREF1058_RS16820 at 587.640 kb on - strand, within HMPREF1058_RS16820 at 587.743 kb on + strand, within HMPREF1058_RS16820 at 587.743 kb on + strand, within HMPREF1058_RS16820 at 587.743 kb on - strand, within HMPREF1058_RS16820 at 587.811 kb on - strand, within HMPREF1058_RS16820 at 587.835 kb on + strand, within HMPREF1058_RS16820 at 587.916 kb on - strand, within HMPREF1058_RS16820 at 587.940 kb on - strand, within HMPREF1058_RS16820 at 588.045 kb on + strand at 588.045 kb on + strand at 588.046 kb on - strand at 588.046 kb on - strand at 588.046 kb on - strand at 588.047 kb on + strand at 588.048 kb on - strand at 588.059 kb on + strand at 588.074 kb on - strand at 588.075 kb on + strand at 588.099 kb on - strand at 588.129 kb on + strand at 588.267 kb on + strand at 588.336 kb on - strand at 588.339 kb on - strand at 588.359 kb on + strand at 588.463 kb on - strand at 588.464 kb on + strand at 588.519 kb on - strand, within HMPREF1058_RS16815 at 588.519 kb on - strand, within HMPREF1058_RS16815 at 588.608 kb on - strand, within HMPREF1058_RS16815 at 588.614 kb on + strand, within HMPREF1058_RS16815 at 588.614 kb on + strand, within HMPREF1058_RS16815 at 588.614 kb on + strand, within HMPREF1058_RS16815 at 588.691 kb on - strand, within HMPREF1058_RS16815 at 588.703 kb on - strand at 588.708 kb on - strand, within HMPREF1058_RS16815 at 588.851 kb on + strand, within HMPREF1058_RS16815 at 588.852 kb on - strand, within HMPREF1058_RS16815 at 588.853 kb on + strand, within HMPREF1058_RS16815 at 588.910 kb on + strand, within HMPREF1058_RS16815 at 588.936 kb on + strand, within HMPREF1058_RS16815 at 588.939 kb on - strand, within HMPREF1058_RS16815 at 588.967 kb on + strand, within HMPREF1058_RS16815 at 588.967 kb on + strand, within HMPREF1058_RS16815 at 588.971 kb on + strand, within HMPREF1058_RS16815 at 589.001 kb on + strand, within HMPREF1058_RS16815 at 589.001 kb on + strand, within HMPREF1058_RS16815 at 589.002 kb on - strand, within HMPREF1058_RS16815 at 589.005 kb on + strand, within HMPREF1058_RS16815 at 589.005 kb on + strand, within HMPREF1058_RS16815 at 589.005 kb on + strand at 589.006 kb on - strand, within HMPREF1058_RS16815 at 589.006 kb on - strand, within HMPREF1058_RS16815 at 589.006 kb on - strand, within HMPREF1058_RS16815 at 589.006 kb on - strand, within HMPREF1058_RS16815 at 589.008 kb on - strand, within HMPREF1058_RS16815 at 589.141 kb on + strand, within HMPREF1058_RS16815
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 585,496 - HMPREF1058_RS16830 0.42 +1.3 585,497 + HMPREF1058_RS16830 0.42 -1.5 585,516 + HMPREF1058_RS16830 0.44 -2.2 585,520 + HMPREF1058_RS16830 0.45 -2.2 585,521 - HMPREF1058_RS16830 0.45 +2.1 585,521 - HMPREF1058_RS16830 0.45 +1.4 585,521 - HMPREF1058_RS16830 0.45 +1.0 585,531 - HMPREF1058_RS16830 0.46 +0.9 585,533 + HMPREF1058_RS16830 0.47 -1.1 585,657 - HMPREF1058_RS16830 0.63 +0.9 585,707 - HMPREF1058_RS16830 0.70 +0.5 585,719 + HMPREF1058_RS16830 0.72 -1.4 585,720 - HMPREF1058_RS16830 0.72 +1.8 585,732 + HMPREF1058_RS16830 0.73 -3.3 585,758 + HMPREF1058_RS16830 0.77 -2.1 585,759 - HMPREF1058_RS16830 0.77 +1.2 585,780 - HMPREF1058_RS16830 0.80 -0.3 585,901 + -1.8 586,003 + HMPREF1058_RS16825 0.13 -4.0 586,004 - HMPREF1058_RS16825 0.14 -1.1 586,079 - HMPREF1058_RS16825 0.27 -1.7 586,133 + HMPREF1058_RS16825 0.37 -1.4 586,148 - HMPREF1058_RS16825 0.39 -1.8 586,210 - HMPREF1058_RS16825 0.51 -0.2 586,230 + HMPREF1058_RS16825 0.54 -3.5 586,252 - HMPREF1058_RS16825 0.58 -2.9 586,252 - HMPREF1058_RS16825 0.58 -2.7 586,331 - HMPREF1058_RS16825 0.72 -1.7 586,333 + HMPREF1058_RS16825 0.73 -0.4 586,334 - HMPREF1058_RS16825 0.73 -3.2 586,334 - HMPREF1058_RS16825 0.73 -3.1 586,334 - HMPREF1058_RS16825 0.73 -1.9 586,337 - HMPREF1058_RS16825 0.74 -0.8 586,339 - HMPREF1058_RS16825 0.74 +0.0 586,442 - -1.5 586,466 - -2.1 586,466 - -2.7 586,467 + -2.7 586,469 + -2.9 586,469 + -2.4 586,470 - -1.1 586,483 + -1.9 586,491 - +4.2 586,495 + -1.4 586,687 + HMPREF1058_RS16820 0.11 -1.4 586,736 + HMPREF1058_RS16820 0.14 -0.5 586,864 - HMPREF1058_RS16820 0.22 -2.5 586,869 + HMPREF1058_RS16820 0.22 -0.8 586,895 + HMPREF1058_RS16820 0.24 -0.8 586,905 - HMPREF1058_RS16820 0.24 -0.2 586,951 - HMPREF1058_RS16820 0.27 -1.3 586,967 + HMPREF1058_RS16820 0.28 +0.3 586,967 + HMPREF1058_RS16820 0.28 +0.6 586,968 - HMPREF1058_RS16820 0.28 -3.4 587,125 + HMPREF1058_RS16820 0.37 -1.9 587,153 + HMPREF1058_RS16820 0.39 -3.8 587,174 + HMPREF1058_RS16820 0.40 -2.3 587,175 - HMPREF1058_RS16820 0.40 +0.8 587,202 - HMPREF1058_RS16820 0.42 -3.0 587,206 - HMPREF1058_RS16820 0.42 -3.5 587,211 - HMPREF1058_RS16820 0.42 -2.4 587,226 + HMPREF1058_RS16820 0.43 -0.0 587,308 + HMPREF1058_RS16820 0.48 -3.1 587,308 + HMPREF1058_RS16820 0.48 -0.5 587,308 + HMPREF1058_RS16820 0.48 -2.8 587,308 + HMPREF1058_RS16820 0.48 -0.5 587,308 + HMPREF1058_RS16820 0.48 -2.5 587,309 + HMPREF1058_RS16820 0.48 -1.9 587,309 - HMPREF1058_RS16820 0.48 -3.3 587,309 - HMPREF1058_RS16820 0.48 -1.9 587,309 - HMPREF1058_RS16820 0.48 -0.7 587,348 + HMPREF1058_RS16820 0.50 -1.5 587,411 + HMPREF1058_RS16820 0.54 -2.6 587,412 - HMPREF1058_RS16820 0.54 -1.8 587,431 - HMPREF1058_RS16820 0.55 -4.7 587,500 - HMPREF1058_RS16820 0.59 -2.5 587,512 - HMPREF1058_RS16820 0.60 -3.6 587,640 - HMPREF1058_RS16820 0.67 -0.3 587,743 + HMPREF1058_RS16820 0.74 -0.5 587,743 + HMPREF1058_RS16820 0.74 -3.3 587,743 - HMPREF1058_RS16820 0.74 -1.7 587,811 - HMPREF1058_RS16820 0.78 +1.6 587,835 + HMPREF1058_RS16820 0.79 -1.4 587,916 - HMPREF1058_RS16820 0.84 +0.6 587,940 - HMPREF1058_RS16820 0.85 +0.1 588,045 + -0.2 588,045 + -0.5 588,046 - -2.5 588,046 - -0.2 588,046 - -0.7 588,047 + -2.9 588,048 - -1.8 588,059 + -1.5 588,074 - -3.1 588,075 + +0.6 588,099 - -2.4 588,129 + -1.1 588,267 + -1.4 588,336 - -2.7 588,339 - -2.1 588,359 + -1.2 588,463 - -2.6 588,464 + +1.6 588,519 - HMPREF1058_RS16815 0.13 -4.3 588,519 - HMPREF1058_RS16815 0.13 -1.5 588,608 - HMPREF1058_RS16815 0.18 -2.0 588,614 + HMPREF1058_RS16815 0.18 -2.0 588,614 + HMPREF1058_RS16815 0.18 -2.0 588,614 + HMPREF1058_RS16815 0.18 -0.5 588,691 - HMPREF1058_RS16815 0.22 -1.1 588,703 - -1.0 588,708 - HMPREF1058_RS16815 0.23 -0.0 588,851 + HMPREF1058_RS16815 0.31 -1.7 588,852 - HMPREF1058_RS16815 0.31 -1.4 588,853 + HMPREF1058_RS16815 0.31 -0.5 588,910 + HMPREF1058_RS16815 0.34 -2.6 588,936 + HMPREF1058_RS16815 0.36 -2.5 588,939 - HMPREF1058_RS16815 0.36 -2.7 588,967 + HMPREF1058_RS16815 0.37 -3.2 588,967 + HMPREF1058_RS16815 0.37 +0.0 588,971 + HMPREF1058_RS16815 0.38 -1.1 589,001 + HMPREF1058_RS16815 0.39 -2.3 589,001 + HMPREF1058_RS16815 0.39 +1.3 589,002 - HMPREF1058_RS16815 0.39 -2.4 589,005 + HMPREF1058_RS16815 0.40 -1.0 589,005 + HMPREF1058_RS16815 0.40 -2.0 589,005 + -0.2 589,006 - HMPREF1058_RS16815 0.40 -1.8 589,006 - HMPREF1058_RS16815 0.40 -1.8 589,006 - HMPREF1058_RS16815 0.40 +0.0 589,006 - HMPREF1058_RS16815 0.40 -1.1 589,008 - HMPREF1058_RS16815 0.40 -4.4 589,141 + HMPREF1058_RS16815 0.47 -0.4
Or see this region's nucleotide sequence