Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16820 and HMPREF1058_RS16815 are separated by 99 nucleotides HMPREF1058_RS16815 and HMPREF1058_RS16810 are separated by 410 nucleotides
HMPREF1058_RS16820: HMPREF1058_RS16820 - biosynthetic-type acetolactate synthase large subunit, at 586,494 to 588,191
_RS16820
HMPREF1058_RS16815: HMPREF1058_RS16815 - dihydroxy-acid dehydratase, at 588,291 to 590,093
_RS16815
HMPREF1058_RS16810: HMPREF1058_RS16810 - hypothetical protein, at 590,504 to 590,878
_RS16810
Position (kb) 588
589
590
591 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 587.308 kb on + strand, within HMPREF1058_RS16820 at 587.308 kb on + strand, within HMPREF1058_RS16820 at 587.308 kb on + strand, within HMPREF1058_RS16820 at 587.308 kb on + strand, within HMPREF1058_RS16820 at 587.308 kb on + strand, within HMPREF1058_RS16820 at 587.309 kb on + strand, within HMPREF1058_RS16820 at 587.309 kb on - strand, within HMPREF1058_RS16820 at 587.309 kb on - strand, within HMPREF1058_RS16820 at 587.309 kb on - strand, within HMPREF1058_RS16820 at 587.348 kb on + strand, within HMPREF1058_RS16820 at 587.411 kb on + strand, within HMPREF1058_RS16820 at 587.412 kb on - strand, within HMPREF1058_RS16820 at 587.431 kb on - strand, within HMPREF1058_RS16820 at 587.500 kb on - strand, within HMPREF1058_RS16820 at 587.512 kb on - strand, within HMPREF1058_RS16820 at 587.640 kb on - strand, within HMPREF1058_RS16820 at 587.743 kb on + strand, within HMPREF1058_RS16820 at 587.743 kb on + strand, within HMPREF1058_RS16820 at 587.743 kb on - strand, within HMPREF1058_RS16820 at 587.811 kb on - strand, within HMPREF1058_RS16820 at 587.835 kb on + strand, within HMPREF1058_RS16820 at 587.916 kb on - strand, within HMPREF1058_RS16820 at 587.940 kb on - strand, within HMPREF1058_RS16820 at 588.045 kb on + strand at 588.045 kb on + strand at 588.046 kb on - strand at 588.046 kb on - strand at 588.046 kb on - strand at 588.047 kb on + strand at 588.048 kb on - strand at 588.059 kb on + strand at 588.074 kb on - strand at 588.075 kb on + strand at 588.099 kb on - strand at 588.129 kb on + strand at 588.267 kb on + strand at 588.336 kb on - strand at 588.339 kb on - strand at 588.359 kb on + strand at 588.463 kb on - strand at 588.464 kb on + strand at 588.519 kb on - strand, within HMPREF1058_RS16815 at 588.519 kb on - strand, within HMPREF1058_RS16815 at 588.608 kb on - strand, within HMPREF1058_RS16815 at 588.614 kb on + strand, within HMPREF1058_RS16815 at 588.614 kb on + strand, within HMPREF1058_RS16815 at 588.614 kb on + strand, within HMPREF1058_RS16815 at 588.691 kb on - strand, within HMPREF1058_RS16815 at 588.703 kb on - strand at 588.708 kb on - strand, within HMPREF1058_RS16815 at 588.851 kb on + strand, within HMPREF1058_RS16815 at 588.852 kb on - strand, within HMPREF1058_RS16815 at 588.853 kb on + strand, within HMPREF1058_RS16815 at 588.910 kb on + strand, within HMPREF1058_RS16815 at 588.936 kb on + strand, within HMPREF1058_RS16815 at 588.939 kb on - strand, within HMPREF1058_RS16815 at 588.967 kb on + strand, within HMPREF1058_RS16815 at 588.967 kb on + strand, within HMPREF1058_RS16815 at 588.971 kb on + strand, within HMPREF1058_RS16815 at 589.001 kb on + strand, within HMPREF1058_RS16815 at 589.001 kb on + strand, within HMPREF1058_RS16815 at 589.002 kb on - strand, within HMPREF1058_RS16815 at 589.005 kb on + strand, within HMPREF1058_RS16815 at 589.005 kb on + strand, within HMPREF1058_RS16815 at 589.005 kb on + strand at 589.006 kb on - strand, within HMPREF1058_RS16815 at 589.006 kb on - strand, within HMPREF1058_RS16815 at 589.006 kb on - strand, within HMPREF1058_RS16815 at 589.006 kb on - strand, within HMPREF1058_RS16815 at 589.008 kb on - strand, within HMPREF1058_RS16815 at 589.141 kb on + strand, within HMPREF1058_RS16815 at 589.262 kb on + strand, within HMPREF1058_RS16815 at 589.363 kb on + strand, within HMPREF1058_RS16815 at 589.370 kb on + strand, within HMPREF1058_RS16815 at 589.371 kb on - strand, within HMPREF1058_RS16815 at 589.418 kb on + strand, within HMPREF1058_RS16815 at 589.511 kb on + strand, within HMPREF1058_RS16815 at 589.544 kb on + strand, within HMPREF1058_RS16815 at 589.677 kb on + strand, within HMPREF1058_RS16815 at 589.730 kb on + strand, within HMPREF1058_RS16815 at 589.773 kb on - strand, within HMPREF1058_RS16815 at 589.775 kb on - strand, within HMPREF1058_RS16815 at 589.817 kb on - strand, within HMPREF1058_RS16815 at 589.817 kb on - strand, within HMPREF1058_RS16815 at 589.818 kb on + strand, within HMPREF1058_RS16815 at 589.819 kb on - strand, within HMPREF1058_RS16815 at 589.824 kb on - strand, within HMPREF1058_RS16815 at 589.842 kb on + strand, within HMPREF1058_RS16815 at 589.843 kb on - strand, within HMPREF1058_RS16815 at 589.923 kb on + strand at 589.940 kb on + strand at 589.972 kb on - strand at 589.980 kb on + strand at 589.981 kb on - strand at 590.097 kb on - strand at 590.107 kb on + strand at 590.118 kb on - strand at 590.119 kb on + strand at 590.119 kb on + strand at 590.119 kb on + strand at 590.120 kb on - strand at 590.120 kb on - strand at 590.166 kb on - strand at 590.175 kb on + strand at 590.176 kb on - strand at 590.180 kb on - strand at 590.186 kb on - strand at 590.192 kb on - strand at 590.192 kb on - strand at 590.239 kb on + strand at 590.239 kb on + strand at 590.261 kb on + strand at 590.267 kb on - strand at 590.270 kb on - strand at 590.273 kb on - strand at 590.279 kb on - strand at 590.279 kb on - strand at 590.426 kb on - strand at 590.506 kb on - strand at 590.506 kb on - strand at 590.529 kb on + strand at 590.529 kb on + strand at 590.530 kb on - strand at 590.530 kb on - strand at 590.530 kb on - strand at 590.557 kb on + strand, within HMPREF1058_RS16810 at 590.558 kb on - strand, within HMPREF1058_RS16810 at 590.558 kb on - strand, within HMPREF1058_RS16810 at 590.578 kb on - strand, within HMPREF1058_RS16810 at 590.578 kb on - strand, within HMPREF1058_RS16810 at 590.605 kb on + strand, within HMPREF1058_RS16810 at 590.606 kb on - strand, within HMPREF1058_RS16810 at 590.717 kb on - strand, within HMPREF1058_RS16810 at 590.786 kb on + strand, within HMPREF1058_RS16810 at 590.787 kb on - strand, within HMPREF1058_RS16810 at 590.830 kb on + strand, within HMPREF1058_RS16810 at 590.843 kb on + strand at 590.867 kb on + strand at 590.919 kb on - strand at 590.926 kb on - strand at 590.936 kb on + strand at 590.937 kb on - strand at 590.947 kb on + strand at 590.950 kb on + strand at 590.951 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 587,308 + HMPREF1058_RS16820 0.48 -3.1 587,308 + HMPREF1058_RS16820 0.48 -0.5 587,308 + HMPREF1058_RS16820 0.48 -2.8 587,308 + HMPREF1058_RS16820 0.48 -0.5 587,308 + HMPREF1058_RS16820 0.48 -2.5 587,309 + HMPREF1058_RS16820 0.48 -1.9 587,309 - HMPREF1058_RS16820 0.48 -3.3 587,309 - HMPREF1058_RS16820 0.48 -1.9 587,309 - HMPREF1058_RS16820 0.48 -0.7 587,348 + HMPREF1058_RS16820 0.50 -1.5 587,411 + HMPREF1058_RS16820 0.54 -2.6 587,412 - HMPREF1058_RS16820 0.54 -1.8 587,431 - HMPREF1058_RS16820 0.55 -4.7 587,500 - HMPREF1058_RS16820 0.59 -2.5 587,512 - HMPREF1058_RS16820 0.60 -3.6 587,640 - HMPREF1058_RS16820 0.67 -0.3 587,743 + HMPREF1058_RS16820 0.74 -0.5 587,743 + HMPREF1058_RS16820 0.74 -3.3 587,743 - HMPREF1058_RS16820 0.74 -1.7 587,811 - HMPREF1058_RS16820 0.78 +1.6 587,835 + HMPREF1058_RS16820 0.79 -1.4 587,916 - HMPREF1058_RS16820 0.84 +0.6 587,940 - HMPREF1058_RS16820 0.85 +0.1 588,045 + -0.2 588,045 + -0.5 588,046 - -2.5 588,046 - -0.2 588,046 - -0.7 588,047 + -2.9 588,048 - -1.8 588,059 + -1.5 588,074 - -3.1 588,075 + +0.6 588,099 - -2.4 588,129 + -1.1 588,267 + -1.4 588,336 - -2.7 588,339 - -2.1 588,359 + -1.2 588,463 - -2.6 588,464 + +1.6 588,519 - HMPREF1058_RS16815 0.13 -4.3 588,519 - HMPREF1058_RS16815 0.13 -1.5 588,608 - HMPREF1058_RS16815 0.18 -2.0 588,614 + HMPREF1058_RS16815 0.18 -2.0 588,614 + HMPREF1058_RS16815 0.18 -2.0 588,614 + HMPREF1058_RS16815 0.18 -0.5 588,691 - HMPREF1058_RS16815 0.22 -1.1 588,703 - -1.0 588,708 - HMPREF1058_RS16815 0.23 -0.0 588,851 + HMPREF1058_RS16815 0.31 -1.7 588,852 - HMPREF1058_RS16815 0.31 -1.4 588,853 + HMPREF1058_RS16815 0.31 -0.5 588,910 + HMPREF1058_RS16815 0.34 -2.6 588,936 + HMPREF1058_RS16815 0.36 -2.5 588,939 - HMPREF1058_RS16815 0.36 -2.7 588,967 + HMPREF1058_RS16815 0.37 -3.2 588,967 + HMPREF1058_RS16815 0.37 +0.0 588,971 + HMPREF1058_RS16815 0.38 -1.1 589,001 + HMPREF1058_RS16815 0.39 -2.3 589,001 + HMPREF1058_RS16815 0.39 +1.3 589,002 - HMPREF1058_RS16815 0.39 -2.4 589,005 + HMPREF1058_RS16815 0.40 -1.0 589,005 + HMPREF1058_RS16815 0.40 -2.0 589,005 + -0.2 589,006 - HMPREF1058_RS16815 0.40 -1.8 589,006 - HMPREF1058_RS16815 0.40 -1.8 589,006 - HMPREF1058_RS16815 0.40 +0.0 589,006 - HMPREF1058_RS16815 0.40 -1.1 589,008 - HMPREF1058_RS16815 0.40 -4.4 589,141 + HMPREF1058_RS16815 0.47 -0.4 589,262 + HMPREF1058_RS16815 0.54 -1.7 589,363 + HMPREF1058_RS16815 0.59 -3.2 589,370 + HMPREF1058_RS16815 0.60 -1.1 589,371 - HMPREF1058_RS16815 0.60 -2.5 589,418 + HMPREF1058_RS16815 0.63 -4.1 589,511 + HMPREF1058_RS16815 0.68 +2.6 589,544 + HMPREF1058_RS16815 0.69 -3.6 589,677 + HMPREF1058_RS16815 0.77 -3.7 589,730 + HMPREF1058_RS16815 0.80 -3.0 589,773 - HMPREF1058_RS16815 0.82 -3.7 589,775 - HMPREF1058_RS16815 0.82 -1.0 589,817 - HMPREF1058_RS16815 0.85 -1.5 589,817 - HMPREF1058_RS16815 0.85 -1.5 589,818 + HMPREF1058_RS16815 0.85 -1.9 589,819 - HMPREF1058_RS16815 0.85 -3.3 589,824 - HMPREF1058_RS16815 0.85 -1.1 589,842 + HMPREF1058_RS16815 0.86 -0.2 589,843 - HMPREF1058_RS16815 0.86 -1.2 589,923 + -3.1 589,940 + -1.2 589,972 - -0.4 589,980 + -2.7 589,981 - -4.0 590,097 - -2.4 590,107 + -0.5 590,118 - -0.7 590,119 + -2.3 590,119 + -1.3 590,119 + -0.5 590,120 - -0.1 590,120 - -0.5 590,166 - -0.7 590,175 + -2.0 590,176 - -3.0 590,180 - -1.0 590,186 - -2.1 590,192 - -3.1 590,192 - -4.2 590,239 + -1.8 590,239 + -0.6 590,261 + -2.3 590,267 - -0.7 590,270 - -1.7 590,273 - -0.6 590,279 - -2.0 590,279 - +1.1 590,426 - -0.6 590,506 - +0.7 590,506 - -1.2 590,529 + -0.5 590,529 + +0.6 590,530 - +1.2 590,530 - -0.6 590,530 - +1.6 590,557 + HMPREF1058_RS16810 0.14 +1.6 590,558 - HMPREF1058_RS16810 0.14 -0.6 590,558 - HMPREF1058_RS16810 0.14 +2.6 590,578 - HMPREF1058_RS16810 0.20 -1.0 590,578 - HMPREF1058_RS16810 0.20 +0.1 590,605 + HMPREF1058_RS16810 0.27 +0.8 590,606 - HMPREF1058_RS16810 0.27 +0.5 590,717 - HMPREF1058_RS16810 0.57 +1.8 590,786 + HMPREF1058_RS16810 0.75 +3.1 590,787 - HMPREF1058_RS16810 0.75 -0.3 590,830 + HMPREF1058_RS16810 0.87 -0.7 590,843 + +0.3 590,867 + +0.5 590,919 - -0.8 590,926 - -1.5 590,936 + +2.6 590,937 - +1.1 590,947 + -0.1 590,950 + -0.7 590,951 - +0.6
Or see this region's nucleotide sequence