Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16765 and HMPREF1058_RS16760 are separated by 20 nucleotides HMPREF1058_RS16760 and HMPREF1058_RS16755 are separated by 92 nucleotides HMPREF1058_RS16755 and HMPREF1058_RS16750 are separated by 18 nucleotides
HMPREF1058_RS16765: HMPREF1058_RS16765 - PhoH family protein, at 602,067 to 603,071
_RS16765
HMPREF1058_RS16760: HMPREF1058_RS16760 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 603,092 to 604,036
_RS16760
HMPREF1058_RS16755: HMPREF1058_RS16755 - bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE, at 604,129 to 604,866
_RS16755
HMPREF1058_RS16750: HMPREF1058_RS16750 - shikimate dehydrogenase, at 604,885 to 605,625
_RS16750
Position (kb) 603
604
605 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 602.110 kb on + strand at 602.242 kb on + strand, within HMPREF1058_RS16765 at 602.242 kb on + strand, within HMPREF1058_RS16765 at 602.329 kb on + strand, within HMPREF1058_RS16765 at 602.329 kb on + strand, within HMPREF1058_RS16765 at 602.348 kb on + strand, within HMPREF1058_RS16765 at 602.348 kb on + strand, within HMPREF1058_RS16765 at 602.348 kb on + strand, within HMPREF1058_RS16765 at 602.353 kb on + strand, within HMPREF1058_RS16765 at 602.432 kb on + strand, within HMPREF1058_RS16765 at 602.470 kb on + strand, within HMPREF1058_RS16765 at 602.472 kb on + strand, within HMPREF1058_RS16765 at 602.472 kb on + strand, within HMPREF1058_RS16765 at 602.472 kb on + strand, within HMPREF1058_RS16765 at 602.611 kb on + strand, within HMPREF1058_RS16765 at 602.632 kb on + strand, within HMPREF1058_RS16765 at 602.639 kb on + strand, within HMPREF1058_RS16765 at 602.639 kb on + strand, within HMPREF1058_RS16765 at 602.708 kb on + strand, within HMPREF1058_RS16765 at 602.779 kb on + strand, within HMPREF1058_RS16765 at 602.780 kb on + strand, within HMPREF1058_RS16765 at 602.845 kb on + strand, within HMPREF1058_RS16765 at 602.947 kb on + strand, within HMPREF1058_RS16765 at 603.097 kb on + strand at 603.168 kb on + strand at 603.201 kb on + strand, within HMPREF1058_RS16760 at 603.214 kb on + strand, within HMPREF1058_RS16760 at 603.231 kb on + strand, within HMPREF1058_RS16760 at 603.364 kb on + strand, within HMPREF1058_RS16760 at 603.684 kb on + strand, within HMPREF1058_RS16760 at 603.721 kb on + strand, within HMPREF1058_RS16760 at 603.725 kb on + strand, within HMPREF1058_RS16760 at 603.826 kb on + strand, within HMPREF1058_RS16760 at 603.999 kb on + strand at 604.059 kb on + strand at 604.314 kb on + strand, within HMPREF1058_RS16755 at 604.314 kb on + strand, within HMPREF1058_RS16755 at 604.436 kb on + strand, within HMPREF1058_RS16755 at 604.521 kb on + strand, within HMPREF1058_RS16755 at 604.658 kb on + strand, within HMPREF1058_RS16755 at 604.660 kb on + strand, within HMPREF1058_RS16755
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 602,110 + -0.5 602,242 + HMPREF1058_RS16765 0.17 -0.2 602,242 + HMPREF1058_RS16765 0.17 +1.1 602,329 + HMPREF1058_RS16765 0.26 +0.9 602,329 + HMPREF1058_RS16765 0.26 +0.6 602,348 + HMPREF1058_RS16765 0.28 -0.3 602,348 + HMPREF1058_RS16765 0.28 +0.2 602,348 + HMPREF1058_RS16765 0.28 +1.2 602,353 + HMPREF1058_RS16765 0.28 -0.1 602,432 + HMPREF1058_RS16765 0.36 +0.2 602,470 + HMPREF1058_RS16765 0.40 +0.7 602,472 + HMPREF1058_RS16765 0.40 -0.4 602,472 + HMPREF1058_RS16765 0.40 -0.5 602,472 + HMPREF1058_RS16765 0.40 +0.7 602,611 + HMPREF1058_RS16765 0.54 +1.6 602,632 + HMPREF1058_RS16765 0.56 +0.0 602,639 + HMPREF1058_RS16765 0.57 -0.8 602,639 + HMPREF1058_RS16765 0.57 -0.2 602,708 + HMPREF1058_RS16765 0.64 -0.4 602,779 + HMPREF1058_RS16765 0.71 +0.6 602,780 + HMPREF1058_RS16765 0.71 -0.5 602,845 + HMPREF1058_RS16765 0.77 +0.2 602,947 + HMPREF1058_RS16765 0.88 -0.5 603,097 + -1.3 603,168 + -1.1 603,201 + HMPREF1058_RS16760 0.12 -1.4 603,214 + HMPREF1058_RS16760 0.13 -2.7 603,231 + HMPREF1058_RS16760 0.15 -0.2 603,364 + HMPREF1058_RS16760 0.29 -3.4 603,684 + HMPREF1058_RS16760 0.63 -0.1 603,721 + HMPREF1058_RS16760 0.67 -2.4 603,725 + HMPREF1058_RS16760 0.67 -0.3 603,826 + HMPREF1058_RS16760 0.78 -1.5 603,999 + -1.4 604,059 + -0.5 604,314 + HMPREF1058_RS16755 0.25 +0.3 604,314 + HMPREF1058_RS16755 0.25 -1.8 604,436 + HMPREF1058_RS16755 0.42 -1.2 604,521 + HMPREF1058_RS16755 0.53 -1.9 604,658 + HMPREF1058_RS16755 0.72 -2.6 604,660 + HMPREF1058_RS16755 0.72 -3.3
Or see this region's nucleotide sequence