Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS16690

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS16695 and HMPREF1058_RS16690 overlap by 4 nucleotidesHMPREF1058_RS16690 and HMPREF1058_RS16685 are separated by 194 nucleotides HMPREF1058_RS16695: HMPREF1058_RS16695 - phosphotransferase, at 614,640 to 616,070 _RS16695 HMPREF1058_RS16690: HMPREF1058_RS16690 - NTP transferase domain-containing protein, at 616,067 to 616,912 _RS16690 HMPREF1058_RS16685: HMPREF1058_RS16685 - methionine synthase, at 617,107 to 619,860 _RS16685 Position (kb) 616 617Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 615.184 kb on + strand, within HMPREF1058_RS16695at 615.290 kb on + strand, within HMPREF1058_RS16695at 615.290 kb on + strand, within HMPREF1058_RS16695at 615.313 kb on + strand, within HMPREF1058_RS16695at 615.342 kb on - strand, within HMPREF1058_RS16695at 615.381 kb on + strand, within HMPREF1058_RS16695at 615.382 kb on - strand, within HMPREF1058_RS16695at 615.382 kb on - strand, within HMPREF1058_RS16695at 615.412 kb on + strand, within HMPREF1058_RS16695at 615.423 kb on + strand, within HMPREF1058_RS16695at 615.499 kb on - strand, within HMPREF1058_RS16695at 615.591 kb on + strand, within HMPREF1058_RS16695at 615.607 kb on + strand, within HMPREF1058_RS16695at 615.732 kb on + strand, within HMPREF1058_RS16695at 615.733 kb on - strand, within HMPREF1058_RS16695at 615.733 kb on - strand, within HMPREF1058_RS16695at 615.841 kb on + strand, within HMPREF1058_RS16695at 615.989 kb on + strandat 616.024 kb on + strandat 616.042 kb on + strandat 616.042 kb on + strandat 616.043 kb on - strandat 616.043 kb on - strandat 616.109 kb on - strandat 616.212 kb on + strand, within HMPREF1058_RS16690at 616.212 kb on + strand, within HMPREF1058_RS16690at 616.354 kb on - strand, within HMPREF1058_RS16690at 616.372 kb on + strand, within HMPREF1058_RS16690at 616.373 kb on - strand, within HMPREF1058_RS16690at 616.487 kb on + strand, within HMPREF1058_RS16690at 616.487 kb on + strand, within HMPREF1058_RS16690at 616.503 kb on + strand, within HMPREF1058_RS16690at 616.504 kb on - strand, within HMPREF1058_RS16690at 616.504 kb on - strand, within HMPREF1058_RS16690at 616.544 kb on + strand, within HMPREF1058_RS16690at 616.556 kb on - strand, within HMPREF1058_RS16690at 616.619 kb on - strand, within HMPREF1058_RS16690at 616.635 kb on + strand, within HMPREF1058_RS16690at 616.690 kb on + strand, within HMPREF1058_RS16690at 616.712 kb on + strand, within HMPREF1058_RS16690at 616.712 kb on + strand, within HMPREF1058_RS16690at 616.776 kb on - strand, within HMPREF1058_RS16690at 616.829 kb on + strandat 616.829 kb on + strandat 616.928 kb on + strandat 616.928 kb on + strandat 616.962 kb on - strandat 617.057 kb on - strandat 617.086 kb on - strandat 617.198 kb on + strandat 617.320 kb on + strandat 617.335 kb on - strandat 617.335 kb on - strandat 617.338 kb on + strandat 617.339 kb on - strandat 617.459 kb on - strand, within HMPREF1058_RS16685at 617.461 kb on - strand, within HMPREF1058_RS16685at 617.479 kb on - strand, within HMPREF1058_RS16685at 617.492 kb on - strand, within HMPREF1058_RS16685at 617.525 kb on - strand, within HMPREF1058_RS16685at 617.525 kb on - strand, within HMPREF1058_RS16685at 617.527 kb on - strand, within HMPREF1058_RS16685at 617.527 kb on - strand, within HMPREF1058_RS16685at 617.535 kb on - strand, within HMPREF1058_RS16685at 617.612 kb on - strand, within HMPREF1058_RS16685at 617.760 kb on + strand, within HMPREF1058_RS16685at 617.761 kb on - strand, within HMPREF1058_RS16685at 617.761 kb on - strand, within HMPREF1058_RS16685at 617.804 kb on + strand, within HMPREF1058_RS16685at 617.857 kb on + strand, within HMPREF1058_RS16685

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
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615,184 + HMPREF1058_RS16695 0.38 +2.0
615,290 + HMPREF1058_RS16695 0.45 -1.0
615,290 + HMPREF1058_RS16695 0.45 -0.8
615,313 + HMPREF1058_RS16695 0.47 -1.5
615,342 - HMPREF1058_RS16695 0.49 +0.3
615,381 + HMPREF1058_RS16695 0.52 -0.9
615,382 - HMPREF1058_RS16695 0.52 +0.5
615,382 - HMPREF1058_RS16695 0.52 +1.1
615,412 + HMPREF1058_RS16695 0.54 -0.6
615,423 + HMPREF1058_RS16695 0.55 -0.1
615,499 - HMPREF1058_RS16695 0.60 +3.2
615,591 + HMPREF1058_RS16695 0.66 -2.1
615,607 + HMPREF1058_RS16695 0.68 -2.2
615,732 + HMPREF1058_RS16695 0.76 -1.0
615,733 - HMPREF1058_RS16695 0.76 +2.6
615,733 - HMPREF1058_RS16695 0.76 +0.0
615,841 + HMPREF1058_RS16695 0.84 -3.2
615,989 + -2.1
616,024 + -2.3
616,042 + -1.2
616,042 + -0.5
616,043 - +1.9
616,043 - -1.0
616,109 - -0.8
616,212 + HMPREF1058_RS16690 0.17 -1.9
616,212 + HMPREF1058_RS16690 0.17 -1.9
616,354 - HMPREF1058_RS16690 0.34 -3.4
616,372 + HMPREF1058_RS16690 0.36 -2.2
616,373 - HMPREF1058_RS16690 0.36 -0.7
616,487 + HMPREF1058_RS16690 0.50 +0.3
616,487 + HMPREF1058_RS16690 0.50 -1.7
616,503 + HMPREF1058_RS16690 0.52 -0.7
616,504 - HMPREF1058_RS16690 0.52 -2.7
616,504 - HMPREF1058_RS16690 0.52 -3.8
616,544 + HMPREF1058_RS16690 0.56 +0.4
616,556 - HMPREF1058_RS16690 0.58 -1.3
616,619 - HMPREF1058_RS16690 0.65 -0.6
616,635 + HMPREF1058_RS16690 0.67 -0.9
616,690 + HMPREF1058_RS16690 0.74 +0.3
616,712 + HMPREF1058_RS16690 0.76 +0.4
616,712 + HMPREF1058_RS16690 0.76 -2.1
616,776 - HMPREF1058_RS16690 0.84 +0.3
616,829 + -0.2
616,829 + -0.4
616,928 + +0.6
616,928 + +3.6
616,962 - -0.1
617,057 - +1.2
617,086 - +1.1
617,198 + +0.4
617,320 + +0.8
617,335 - +0.8
617,335 - -0.1
617,338 + +0.9
617,339 - +0.3
617,459 - HMPREF1058_RS16685 0.13 -0.4
617,461 - HMPREF1058_RS16685 0.13 +1.1
617,479 - HMPREF1058_RS16685 0.14 -1.2
617,492 - HMPREF1058_RS16685 0.14 -0.8
617,525 - HMPREF1058_RS16685 0.15 +0.6
617,525 - HMPREF1058_RS16685 0.15 +0.4
617,527 - HMPREF1058_RS16685 0.15 +0.7
617,527 - HMPREF1058_RS16685 0.15 +1.1
617,535 - HMPREF1058_RS16685 0.16 +0.1
617,612 - HMPREF1058_RS16685 0.18 +0.0
617,760 + HMPREF1058_RS16685 0.24 -0.4
617,761 - HMPREF1058_RS16685 0.24 +0.1
617,761 - HMPREF1058_RS16685 0.24 +0.1
617,804 + HMPREF1058_RS16685 0.25 -0.4
617,857 + HMPREF1058_RS16685 0.27 -0.4

Or see this region's nucleotide sequence