Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16515 and HMPREF1058_RS16510 are separated by 156 nucleotides HMPREF1058_RS16510 and HMPREF1058_RS16505 are separated by 102 nucleotides HMPREF1058_RS16505 and HMPREF1058_RS16500 are separated by 27 nucleotides HMPREF1058_RS16500 and HMPREF1058_RS16495 are separated by 23 nucleotides
HMPREF1058_RS16515: HMPREF1058_RS16515 - GNAT family N-acetyltransferase, at 652,849 to 653,871
_RS16515
HMPREF1058_RS16510: HMPREF1058_RS16510 - methylmalonyl-CoA epimerase, at 654,028 to 654,441
_RS16510
HMPREF1058_RS16505: HMPREF1058_RS16505 - acyl-CoA carboxylase subunit beta, at 654,544 to 656,097
_RS16505
HMPREF1058_RS16500: HMPREF1058_RS16500 - OadG family protein, at 656,125 to 657,054
_RS16500
HMPREF1058_RS16495: HMPREF1058_RS16495 - biotin/lipoyl-binding protein, at 657,078 to 657,509
_RS16495
Position (kb) 654
655
656
657 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 653.587 kb on - strand, within HMPREF1058_RS16515 at 653.587 kb on - strand, within HMPREF1058_RS16515 at 653.614 kb on + strand, within HMPREF1058_RS16515 at 653.634 kb on + strand, within HMPREF1058_RS16515 at 653.647 kb on + strand, within HMPREF1058_RS16515 at 653.688 kb on + strand, within HMPREF1058_RS16515 at 653.689 kb on - strand, within HMPREF1058_RS16515 at 653.696 kb on - strand, within HMPREF1058_RS16515 at 653.696 kb on - strand, within HMPREF1058_RS16515 at 653.775 kb on + strand at 653.776 kb on - strand at 653.776 kb on - strand at 653.776 kb on - strand at 653.919 kb on - strand at 653.997 kb on + strand at 654.011 kb on - strand at 654.108 kb on - strand, within HMPREF1058_RS16510 at 654.122 kb on - strand, within HMPREF1058_RS16510 at 654.173 kb on + strand, within HMPREF1058_RS16510 at 654.173 kb on + strand, within HMPREF1058_RS16510 at 654.204 kb on + strand, within HMPREF1058_RS16510 at 654.204 kb on + strand, within HMPREF1058_RS16510 at 654.478 kb on + strand at 654.478 kb on + strand at 654.479 kb on - strand at 654.499 kb on - strand at 654.540 kb on + strand at 654.541 kb on - strand at 654.640 kb on - strand at 654.794 kb on + strand, within HMPREF1058_RS16505 at 654.794 kb on + strand, within HMPREF1058_RS16505 at 654.794 kb on + strand, within HMPREF1058_RS16505 at 654.795 kb on - strand, within HMPREF1058_RS16505 at 654.897 kb on + strand, within HMPREF1058_RS16505 at 654.898 kb on - strand, within HMPREF1058_RS16505 at 655.069 kb on + strand, within HMPREF1058_RS16505 at 655.118 kb on - strand, within HMPREF1058_RS16505 at 655.118 kb on - strand, within HMPREF1058_RS16505 at 655.119 kb on + strand, within HMPREF1058_RS16505 at 655.119 kb on + strand, within HMPREF1058_RS16505 at 655.120 kb on - strand, within HMPREF1058_RS16505 at 655.120 kb on - strand, within HMPREF1058_RS16505 at 655.137 kb on + strand, within HMPREF1058_RS16505 at 655.278 kb on - strand, within HMPREF1058_RS16505 at 655.283 kb on - strand, within HMPREF1058_RS16505 at 655.319 kb on + strand, within HMPREF1058_RS16505 at 655.319 kb on + strand at 655.394 kb on - strand, within HMPREF1058_RS16505 at 655.398 kb on + strand, within HMPREF1058_RS16505 at 655.399 kb on - strand, within HMPREF1058_RS16505 at 655.399 kb on - strand, within HMPREF1058_RS16505 at 655.402 kb on + strand, within HMPREF1058_RS16505 at 655.402 kb on + strand, within HMPREF1058_RS16505 at 655.402 kb on + strand, within HMPREF1058_RS16505 at 655.403 kb on - strand, within HMPREF1058_RS16505 at 655.425 kb on - strand, within HMPREF1058_RS16505 at 655.464 kb on + strand, within HMPREF1058_RS16505 at 655.508 kb on + strand, within HMPREF1058_RS16505 at 655.512 kb on + strand, within HMPREF1058_RS16505 at 655.513 kb on - strand, within HMPREF1058_RS16505 at 655.513 kb on - strand, within HMPREF1058_RS16505 at 655.628 kb on + strand, within HMPREF1058_RS16505 at 655.628 kb on + strand, within HMPREF1058_RS16505 at 655.629 kb on - strand, within HMPREF1058_RS16505 at 655.775 kb on + strand, within HMPREF1058_RS16505 at 655.776 kb on - strand, within HMPREF1058_RS16505 at 655.810 kb on + strand, within HMPREF1058_RS16505 at 655.865 kb on + strand, within HMPREF1058_RS16505 at 655.870 kb on + strand, within HMPREF1058_RS16505 at 655.973 kb on - strand at 656.085 kb on + strand at 656.086 kb on - strand at 656.141 kb on + strand at 656.142 kb on - strand at 656.367 kb on + strand, within HMPREF1058_RS16500 at 656.371 kb on + strand, within HMPREF1058_RS16500 at 656.377 kb on - strand, within HMPREF1058_RS16500 at 656.393 kb on + strand, within HMPREF1058_RS16500 at 656.470 kb on - strand, within HMPREF1058_RS16500 at 656.641 kb on + strand, within HMPREF1058_RS16500 at 656.641 kb on + strand, within HMPREF1058_RS16500 at 656.642 kb on - strand, within HMPREF1058_RS16500 at 656.754 kb on - strand, within HMPREF1058_RS16500 at 656.840 kb on + strand, within HMPREF1058_RS16500 at 656.948 kb on + strand, within HMPREF1058_RS16500 at 656.995 kb on - strand at 656.999 kb on - strand at 656.999 kb on - strand at 657.052 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 653,587 - HMPREF1058_RS16515 0.72 -0.5 653,587 - HMPREF1058_RS16515 0.72 -0.6 653,614 + HMPREF1058_RS16515 0.75 +1.5 653,634 + HMPREF1058_RS16515 0.77 -1.0 653,647 + HMPREF1058_RS16515 0.78 -0.7 653,688 + HMPREF1058_RS16515 0.82 -0.2 653,689 - HMPREF1058_RS16515 0.82 +1.0 653,696 - HMPREF1058_RS16515 0.83 +1.1 653,696 - HMPREF1058_RS16515 0.83 +0.9 653,775 + -0.3 653,776 - -0.7 653,776 - +2.0 653,776 - +2.6 653,919 - -1.4 653,997 + -0.4 654,011 - -1.1 654,108 - HMPREF1058_RS16510 0.19 -0.7 654,122 - HMPREF1058_RS16510 0.23 -0.6 654,173 + HMPREF1058_RS16510 0.35 -2.1 654,173 + HMPREF1058_RS16510 0.35 -0.4 654,204 + HMPREF1058_RS16510 0.43 -3.0 654,204 + HMPREF1058_RS16510 0.43 -1.6 654,478 + +1.9 654,478 + -0.6 654,479 - -0.9 654,499 - +0.2 654,540 + +0.3 654,541 - -0.2 654,640 - -2.2 654,794 + HMPREF1058_RS16505 0.16 -0.9 654,794 + HMPREF1058_RS16505 0.16 -0.0 654,794 + HMPREF1058_RS16505 0.16 -3.3 654,795 - HMPREF1058_RS16505 0.16 -0.2 654,897 + HMPREF1058_RS16505 0.23 -0.6 654,898 - HMPREF1058_RS16505 0.23 -3.8 655,069 + HMPREF1058_RS16505 0.34 +0.3 655,118 - HMPREF1058_RS16505 0.37 +0.3 655,118 - HMPREF1058_RS16505 0.37 +0.3 655,119 + HMPREF1058_RS16505 0.37 -1.2 655,119 + HMPREF1058_RS16505 0.37 +1.8 655,120 - HMPREF1058_RS16505 0.37 -1.7 655,120 - HMPREF1058_RS16505 0.37 -2.0 655,137 + HMPREF1058_RS16505 0.38 -1.9 655,278 - HMPREF1058_RS16505 0.47 -2.8 655,283 - HMPREF1058_RS16505 0.48 -1.3 655,319 + HMPREF1058_RS16505 0.50 +1.6 655,319 + -0.9 655,394 - HMPREF1058_RS16505 0.55 +0.3 655,398 + HMPREF1058_RS16505 0.55 -0.0 655,399 - HMPREF1058_RS16505 0.55 -1.2 655,399 - HMPREF1058_RS16505 0.55 +0.6 655,402 + HMPREF1058_RS16505 0.55 +0.6 655,402 + HMPREF1058_RS16505 0.55 -1.3 655,402 + HMPREF1058_RS16505 0.55 +1.0 655,403 - HMPREF1058_RS16505 0.55 +1.6 655,425 - HMPREF1058_RS16505 0.57 -1.6 655,464 + HMPREF1058_RS16505 0.59 -0.9 655,508 + HMPREF1058_RS16505 0.62 -0.1 655,512 + HMPREF1058_RS16505 0.62 -0.6 655,513 - HMPREF1058_RS16505 0.62 -2.5 655,513 - HMPREF1058_RS16505 0.62 -0.5 655,628 + HMPREF1058_RS16505 0.70 -0.2 655,628 + HMPREF1058_RS16505 0.70 -1.5 655,629 - HMPREF1058_RS16505 0.70 -0.7 655,775 + HMPREF1058_RS16505 0.79 -0.4 655,776 - HMPREF1058_RS16505 0.79 -0.9 655,810 + HMPREF1058_RS16505 0.81 +1.0 655,865 + HMPREF1058_RS16505 0.85 -2.2 655,870 + HMPREF1058_RS16505 0.85 -2.1 655,973 - -1.4 656,085 + -2.2 656,086 - -0.2 656,141 + -2.0 656,142 - -0.0 656,367 + HMPREF1058_RS16500 0.26 -2.2 656,371 + HMPREF1058_RS16500 0.26 -2.1 656,377 - HMPREF1058_RS16500 0.27 +0.6 656,393 + HMPREF1058_RS16500 0.29 -1.5 656,470 - HMPREF1058_RS16500 0.37 -1.6 656,641 + HMPREF1058_RS16500 0.55 -1.0 656,641 + HMPREF1058_RS16500 0.55 +0.3 656,642 - HMPREF1058_RS16500 0.56 -1.3 656,754 - HMPREF1058_RS16500 0.68 -1.8 656,840 + HMPREF1058_RS16500 0.77 -0.5 656,948 + HMPREF1058_RS16500 0.88 +1.0 656,995 - +0.3 656,999 - +1.6 656,999 - -0.4 657,052 + -0.2
Or see this region's nucleotide sequence