Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16505 and HMPREF1058_RS16500 are separated by 27 nucleotides HMPREF1058_RS16500 and HMPREF1058_RS16495 are separated by 23 nucleotides HMPREF1058_RS16495 and HMPREF1058_RS16490 are separated by 1 nucleotides
HMPREF1058_RS16505: HMPREF1058_RS16505 - acyl-CoA carboxylase subunit beta, at 654,544 to 656,097
_RS16505
HMPREF1058_RS16500: HMPREF1058_RS16500 - OadG family protein, at 656,125 to 657,054
_RS16500
HMPREF1058_RS16495: HMPREF1058_RS16495 - biotin/lipoyl-binding protein, at 657,078 to 657,509
_RS16495
HMPREF1058_RS16490: HMPREF1058_RS16490 - sodium ion-translocating decarboxylase subunit beta, at 657,511 to 658,671
_RS16490
Position (kb) 656
657
658 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 655.137 kb on + strand, within HMPREF1058_RS16505 at 655.278 kb on - strand, within HMPREF1058_RS16505 at 655.283 kb on - strand, within HMPREF1058_RS16505 at 655.319 kb on + strand, within HMPREF1058_RS16505 at 655.319 kb on + strand at 655.394 kb on - strand, within HMPREF1058_RS16505 at 655.398 kb on + strand, within HMPREF1058_RS16505 at 655.399 kb on - strand, within HMPREF1058_RS16505 at 655.399 kb on - strand, within HMPREF1058_RS16505 at 655.402 kb on + strand, within HMPREF1058_RS16505 at 655.402 kb on + strand, within HMPREF1058_RS16505 at 655.402 kb on + strand, within HMPREF1058_RS16505 at 655.403 kb on - strand, within HMPREF1058_RS16505 at 655.425 kb on - strand, within HMPREF1058_RS16505 at 655.464 kb on + strand, within HMPREF1058_RS16505 at 655.508 kb on + strand, within HMPREF1058_RS16505 at 655.512 kb on + strand, within HMPREF1058_RS16505 at 655.513 kb on - strand, within HMPREF1058_RS16505 at 655.513 kb on - strand, within HMPREF1058_RS16505 at 655.628 kb on + strand, within HMPREF1058_RS16505 at 655.628 kb on + strand, within HMPREF1058_RS16505 at 655.629 kb on - strand, within HMPREF1058_RS16505 at 655.775 kb on + strand, within HMPREF1058_RS16505 at 655.776 kb on - strand, within HMPREF1058_RS16505 at 655.810 kb on + strand, within HMPREF1058_RS16505 at 655.865 kb on + strand, within HMPREF1058_RS16505 at 655.870 kb on + strand, within HMPREF1058_RS16505 at 655.973 kb on - strand at 656.085 kb on + strand at 656.086 kb on - strand at 656.141 kb on + strand at 656.142 kb on - strand at 656.367 kb on + strand, within HMPREF1058_RS16500 at 656.371 kb on + strand, within HMPREF1058_RS16500 at 656.377 kb on - strand, within HMPREF1058_RS16500 at 656.393 kb on + strand, within HMPREF1058_RS16500 at 656.470 kb on - strand, within HMPREF1058_RS16500 at 656.641 kb on + strand, within HMPREF1058_RS16500 at 656.641 kb on + strand, within HMPREF1058_RS16500 at 656.642 kb on - strand, within HMPREF1058_RS16500 at 656.754 kb on - strand, within HMPREF1058_RS16500 at 656.840 kb on + strand, within HMPREF1058_RS16500 at 656.948 kb on + strand, within HMPREF1058_RS16500 at 656.995 kb on - strand at 656.999 kb on - strand at 656.999 kb on - strand at 657.052 kb on + strand at 657.113 kb on - strand at 657.134 kb on + strand, within HMPREF1058_RS16495 at 657.137 kb on - strand, within HMPREF1058_RS16495 at 657.137 kb on - strand, within HMPREF1058_RS16495 at 657.263 kb on + strand, within HMPREF1058_RS16495 at 657.263 kb on + strand, within HMPREF1058_RS16495 at 657.347 kb on - strand, within HMPREF1058_RS16495 at 657.457 kb on + strand, within HMPREF1058_RS16495 at 657.461 kb on + strand, within HMPREF1058_RS16495 at 657.508 kb on - strand at 657.546 kb on - strand at 657.546 kb on - strand at 657.562 kb on + strand at 657.562 kb on + strand at 657.563 kb on - strand at 657.564 kb on + strand at 657.565 kb on - strand at 657.595 kb on - strand at 657.600 kb on - strand at 657.612 kb on - strand at 657.618 kb on - strand at 657.627 kb on - strand, within HMPREF1058_RS16490 at 657.627 kb on - strand, within HMPREF1058_RS16490 at 657.628 kb on + strand, within HMPREF1058_RS16490 at 657.628 kb on + strand, within HMPREF1058_RS16490 at 657.629 kb on - strand, within HMPREF1058_RS16490 at 657.699 kb on + strand, within HMPREF1058_RS16490 at 657.699 kb on + strand, within HMPREF1058_RS16490 at 657.740 kb on - strand, within HMPREF1058_RS16490 at 657.740 kb on - strand, within HMPREF1058_RS16490 at 657.740 kb on - strand, within HMPREF1058_RS16490 at 657.740 kb on - strand, within HMPREF1058_RS16490 at 657.767 kb on + strand, within HMPREF1058_RS16490 at 657.770 kb on - strand, within HMPREF1058_RS16490 at 657.781 kb on - strand, within HMPREF1058_RS16490 at 657.804 kb on + strand, within HMPREF1058_RS16490 at 657.812 kb on + strand, within HMPREF1058_RS16490 at 657.908 kb on - strand, within HMPREF1058_RS16490 at 658.011 kb on - strand, within HMPREF1058_RS16490 at 658.048 kb on + strand, within HMPREF1058_RS16490 at 658.054 kb on + strand, within HMPREF1058_RS16490 at 658.054 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 655,137 + HMPREF1058_RS16505 0.38 -1.9 655,278 - HMPREF1058_RS16505 0.47 -2.8 655,283 - HMPREF1058_RS16505 0.48 -1.3 655,319 + HMPREF1058_RS16505 0.50 +1.6 655,319 + -0.9 655,394 - HMPREF1058_RS16505 0.55 +0.3 655,398 + HMPREF1058_RS16505 0.55 -0.0 655,399 - HMPREF1058_RS16505 0.55 -1.2 655,399 - HMPREF1058_RS16505 0.55 +0.6 655,402 + HMPREF1058_RS16505 0.55 +0.6 655,402 + HMPREF1058_RS16505 0.55 -1.3 655,402 + HMPREF1058_RS16505 0.55 +1.0 655,403 - HMPREF1058_RS16505 0.55 +1.6 655,425 - HMPREF1058_RS16505 0.57 -1.6 655,464 + HMPREF1058_RS16505 0.59 -0.9 655,508 + HMPREF1058_RS16505 0.62 -0.1 655,512 + HMPREF1058_RS16505 0.62 -0.6 655,513 - HMPREF1058_RS16505 0.62 -2.5 655,513 - HMPREF1058_RS16505 0.62 -0.5 655,628 + HMPREF1058_RS16505 0.70 -0.2 655,628 + HMPREF1058_RS16505 0.70 -1.5 655,629 - HMPREF1058_RS16505 0.70 -0.7 655,775 + HMPREF1058_RS16505 0.79 -0.4 655,776 - HMPREF1058_RS16505 0.79 -0.9 655,810 + HMPREF1058_RS16505 0.81 +1.0 655,865 + HMPREF1058_RS16505 0.85 -2.2 655,870 + HMPREF1058_RS16505 0.85 -2.1 655,973 - -1.4 656,085 + -2.2 656,086 - -0.2 656,141 + -2.0 656,142 - -0.0 656,367 + HMPREF1058_RS16500 0.26 -2.2 656,371 + HMPREF1058_RS16500 0.26 -2.1 656,377 - HMPREF1058_RS16500 0.27 +0.6 656,393 + HMPREF1058_RS16500 0.29 -1.5 656,470 - HMPREF1058_RS16500 0.37 -1.6 656,641 + HMPREF1058_RS16500 0.55 -1.0 656,641 + HMPREF1058_RS16500 0.55 +0.3 656,642 - HMPREF1058_RS16500 0.56 -1.3 656,754 - HMPREF1058_RS16500 0.68 -1.8 656,840 + HMPREF1058_RS16500 0.77 -0.5 656,948 + HMPREF1058_RS16500 0.88 +1.0 656,995 - +0.3 656,999 - +1.6 656,999 - -0.4 657,052 + -0.2 657,113 - -0.7 657,134 + HMPREF1058_RS16495 0.13 -0.6 657,137 - HMPREF1058_RS16495 0.14 -1.5 657,137 - HMPREF1058_RS16495 0.14 -0.6 657,263 + HMPREF1058_RS16495 0.43 -2.6 657,263 + HMPREF1058_RS16495 0.43 -2.4 657,347 - HMPREF1058_RS16495 0.62 +1.6 657,457 + HMPREF1058_RS16495 0.88 -0.6 657,461 + HMPREF1058_RS16495 0.89 -0.2 657,508 - -0.5 657,546 - -0.3 657,546 - -2.7 657,562 + -1.0 657,562 + -0.2 657,563 - -1.5 657,564 + +0.1 657,565 - -2.4 657,595 - -1.0 657,600 - -3.3 657,612 - -0.1 657,618 - +0.6 657,627 - HMPREF1058_RS16490 0.10 -2.5 657,627 - HMPREF1058_RS16490 0.10 -0.6 657,628 + HMPREF1058_RS16490 0.10 -1.7 657,628 + HMPREF1058_RS16490 0.10 -0.0 657,629 - HMPREF1058_RS16490 0.10 -0.5 657,699 + HMPREF1058_RS16490 0.16 +0.6 657,699 + HMPREF1058_RS16490 0.16 -1.5 657,740 - HMPREF1058_RS16490 0.20 -2.8 657,740 - HMPREF1058_RS16490 0.20 -1.1 657,740 - HMPREF1058_RS16490 0.20 -0.6 657,740 - HMPREF1058_RS16490 0.20 -0.4 657,767 + HMPREF1058_RS16490 0.22 -0.1 657,770 - HMPREF1058_RS16490 0.22 -0.5 657,781 - HMPREF1058_RS16490 0.23 -0.6 657,804 + HMPREF1058_RS16490 0.25 -1.1 657,812 + HMPREF1058_RS16490 0.26 -0.5 657,908 - HMPREF1058_RS16490 0.34 -0.6 658,011 - HMPREF1058_RS16490 0.43 +0.1 658,048 + HMPREF1058_RS16490 0.46 +0.1 658,054 + HMPREF1058_RS16490 0.47 +0.5 658,054 + +0.6
Or see this region's nucleotide sequence