Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16450 and HMPREF1058_RS16445 are separated by 645 nucleotides HMPREF1058_RS16445 and HMPREF1058_RS16440 are separated by 146 nucleotides HMPREF1058_RS16440 and HMPREF1058_RS16435 are separated by 79 nucleotides HMPREF1058_RS16435 and HMPREF1058_RS16430 are separated by 103 nucleotides
HMPREF1058_RS16450: HMPREF1058_RS16450 - PH domain-containing protein, at 666,163 to 666,606
_RS16450
HMPREF1058_RS16445: HMPREF1058_RS16445 - tRNA-Ser, at 667,252 to 667,336
_RS16445
HMPREF1058_RS16440: HMPREF1058_RS16440 - endonuclease MutS2, at 667,483 to 669,987
_RS16440
HMPREF1058_RS16435: HMPREF1058_RS16435 - RNA polymerase sigma-70 factor, at 670,067 to 670,618
_RS16435
HMPREF1058_RS16430: HMPREF1058_RS16430 - FecR domain-containing protein, at 670,722 to 671,891
_RS16430
Position (kb) 667
668
669
670 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 666.495 kb on + strand, within HMPREF1058_RS16450 at 666.495 kb on + strand, within HMPREF1058_RS16450 at 666.496 kb on - strand, within HMPREF1058_RS16450 at 666.496 kb on - strand, within HMPREF1058_RS16450 at 666.513 kb on + strand, within HMPREF1058_RS16450 at 666.518 kb on + strand, within HMPREF1058_RS16450 at 666.519 kb on - strand, within HMPREF1058_RS16450 at 666.522 kb on + strand, within HMPREF1058_RS16450 at 666.570 kb on - strand at 666.651 kb on - strand at 666.668 kb on + strand at 666.669 kb on - strand at 666.669 kb on - strand at 666.686 kb on + strand at 666.690 kb on + strand at 666.695 kb on - strand at 666.698 kb on + strand at 666.698 kb on + strand at 666.713 kb on - strand at 666.716 kb on + strand at 666.719 kb on - strand at 666.722 kb on + strand at 666.722 kb on + strand at 666.722 kb on + strand at 666.795 kb on - strand at 666.947 kb on + strand at 666.953 kb on - strand at 666.987 kb on - strand at 667.007 kb on + strand at 667.007 kb on + strand at 667.007 kb on + strand at 667.008 kb on - strand at 667.108 kb on + strand at 667.109 kb on - strand at 667.112 kb on + strand at 667.112 kb on + strand at 667.112 kb on + strand at 667.113 kb on - strand at 667.170 kb on - strand at 667.356 kb on - strand at 667.390 kb on + strand at 667.391 kb on - strand at 667.658 kb on + strand at 667.700 kb on + strand at 667.734 kb on + strand, within HMPREF1058_RS16440 at 667.735 kb on - strand, within HMPREF1058_RS16440 at 667.794 kb on + strand, within HMPREF1058_RS16440 at 667.964 kb on + strand, within HMPREF1058_RS16440 at 668.006 kb on + strand, within HMPREF1058_RS16440 at 668.053 kb on + strand, within HMPREF1058_RS16440 at 668.144 kb on + strand, within HMPREF1058_RS16440 at 668.933 kb on - strand, within HMPREF1058_RS16440 at 668.945 kb on + strand, within HMPREF1058_RS16440 at 668.999 kb on + strand, within HMPREF1058_RS16440 at 669.070 kb on + strand, within HMPREF1058_RS16440 at 669.527 kb on + strand, within HMPREF1058_RS16440 at 669.600 kb on - strand, within HMPREF1058_RS16440 at 669.603 kb on + strand, within HMPREF1058_RS16440 at 669.725 kb on + strand, within HMPREF1058_RS16440 at 669.806 kb on - strand at 669.837 kb on - strand at 670.103 kb on - strand at 670.143 kb on - strand, within HMPREF1058_RS16435 at 670.146 kb on - strand, within HMPREF1058_RS16435 at 670.149 kb on + strand, within HMPREF1058_RS16435 at 670.150 kb on - strand, within HMPREF1058_RS16435 at 670.281 kb on + strand, within HMPREF1058_RS16435 at 670.281 kb on + strand, within HMPREF1058_RS16435 at 670.283 kb on + strand, within HMPREF1058_RS16435 at 670.337 kb on + strand, within HMPREF1058_RS16435 at 670.473 kb on + strand, within HMPREF1058_RS16435 at 670.474 kb on - strand, within HMPREF1058_RS16435 at 670.521 kb on + strand, within HMPREF1058_RS16435 at 670.521 kb on + strand, within HMPREF1058_RS16435 at 670.521 kb on + strand, within HMPREF1058_RS16435 at 670.521 kb on + strand, within HMPREF1058_RS16435 at 670.522 kb on - strand, within HMPREF1058_RS16435 at 670.522 kb on - strand, within HMPREF1058_RS16435 at 670.522 kb on - strand, within HMPREF1058_RS16435 at 670.525 kb on + strand, within HMPREF1058_RS16435 at 670.525 kb on + strand, within HMPREF1058_RS16435 at 670.612 kb on + strand at 670.613 kb on - strand at 670.628 kb on - strand at 670.695 kb on + strand at 670.696 kb on - strand at 670.740 kb on + strand at 670.740 kb on + strand at 670.741 kb on - strand at 670.756 kb on + strand at 670.781 kb on - strand at 670.971 kb on - strand, within HMPREF1058_RS16430 at 670.982 kb on - strand, within HMPREF1058_RS16430 at 670.982 kb on - strand, within HMPREF1058_RS16430 at 670.986 kb on + strand, within HMPREF1058_RS16430
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 666,495 + HMPREF1058_RS16450 0.75 +0.7 666,495 + HMPREF1058_RS16450 0.75 -0.1 666,496 - HMPREF1058_RS16450 0.75 -1.1 666,496 - HMPREF1058_RS16450 0.75 -1.5 666,513 + HMPREF1058_RS16450 0.79 -0.3 666,518 + HMPREF1058_RS16450 0.80 +1.0 666,519 - HMPREF1058_RS16450 0.80 -0.6 666,522 + HMPREF1058_RS16450 0.81 -0.4 666,570 - +0.2 666,651 - -1.0 666,668 + +0.7 666,669 - -0.5 666,669 - -0.6 666,686 + +0.3 666,690 + -1.0 666,695 - -0.1 666,698 + -0.1 666,698 + -0.3 666,713 - +2.6 666,716 + -0.5 666,719 - -1.4 666,722 + +1.1 666,722 + +0.2 666,722 + -0.3 666,795 - -0.0 666,947 + +0.0 666,953 - -0.0 666,987 - +0.5 667,007 + +0.1 667,007 + -1.3 667,007 + -0.8 667,008 - -0.2 667,108 + -0.8 667,109 - -0.8 667,112 + -0.9 667,112 + -2.1 667,112 + +0.2 667,113 - -0.2 667,170 - -2.0 667,356 - -0.4 667,390 + -1.2 667,391 - +1.4 667,658 + -1.2 667,700 + +0.2 667,734 + HMPREF1058_RS16440 0.10 -0.0 667,735 - HMPREF1058_RS16440 0.10 +0.1 667,794 + HMPREF1058_RS16440 0.12 +0.6 667,964 + HMPREF1058_RS16440 0.19 -1.7 668,006 + HMPREF1058_RS16440 0.21 -1.4 668,053 + HMPREF1058_RS16440 0.23 -2.7 668,144 + HMPREF1058_RS16440 0.26 -2.3 668,933 - HMPREF1058_RS16440 0.58 -1.1 668,945 + HMPREF1058_RS16440 0.58 +0.8 668,999 + HMPREF1058_RS16440 0.61 -0.0 669,070 + HMPREF1058_RS16440 0.63 +0.2 669,527 + HMPREF1058_RS16440 0.82 -2.0 669,600 - HMPREF1058_RS16440 0.85 -0.0 669,603 + HMPREF1058_RS16440 0.85 -2.0 669,725 + HMPREF1058_RS16440 0.90 -1.1 669,806 - -0.0 669,837 - +0.2 670,103 - -1.8 670,143 - HMPREF1058_RS16435 0.14 -0.0 670,146 - HMPREF1058_RS16435 0.14 +0.3 670,149 + HMPREF1058_RS16435 0.15 -0.3 670,150 - HMPREF1058_RS16435 0.15 -1.4 670,281 + HMPREF1058_RS16435 0.39 -1.5 670,281 + HMPREF1058_RS16435 0.39 +3.9 670,283 + HMPREF1058_RS16435 0.39 +0.7 670,337 + HMPREF1058_RS16435 0.49 +1.5 670,473 + HMPREF1058_RS16435 0.74 +0.2 670,474 - HMPREF1058_RS16435 0.74 -1.3 670,521 + HMPREF1058_RS16435 0.82 -0.4 670,521 + HMPREF1058_RS16435 0.82 +0.8 670,521 + HMPREF1058_RS16435 0.82 -0.6 670,521 + HMPREF1058_RS16435 0.82 -2.1 670,522 - HMPREF1058_RS16435 0.82 +0.3 670,522 - HMPREF1058_RS16435 0.82 -2.3 670,522 - HMPREF1058_RS16435 0.82 +1.6 670,525 + HMPREF1058_RS16435 0.83 +0.2 670,525 + HMPREF1058_RS16435 0.83 -1.2 670,612 + +1.4 670,613 - -1.3 670,628 - +1.0 670,695 + -0.4 670,696 - -0.7 670,740 + +0.0 670,740 + -1.9 670,741 - -0.7 670,756 + +0.1 670,781 - -1.2 670,971 - HMPREF1058_RS16430 0.21 +0.2 670,982 - HMPREF1058_RS16430 0.22 +0.4 670,982 - HMPREF1058_RS16430 0.22 -0.5 670,986 + HMPREF1058_RS16430 0.23 -1.7
Or see this region's nucleotide sequence