Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15885 and HMPREF1058_RS15880 are separated by 3 nucleotides HMPREF1058_RS15880 and HMPREF1058_RS15875 are separated by 2 nucleotides
HMPREF1058_RS15885: HMPREF1058_RS15885 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB, at 813,825 to 814,943
_RS15885
HMPREF1058_RS15880: HMPREF1058_RS15880 - histidinol-phosphate transaminase, at 814,947 to 815,987
_RS15880
HMPREF1058_RS15875: HMPREF1058_RS15875 - histidinol dehydrogenase, at 815,990 to 817,270
_RS15875
Position (kb) 814
815
816 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 813.960 kb on + strand, within HMPREF1058_RS15885 at 814.172 kb on + strand, within HMPREF1058_RS15885 at 814.172 kb on + strand, within HMPREF1058_RS15885 at 814.172 kb on + strand at 814.205 kb on + strand, within HMPREF1058_RS15885 at 814.208 kb on + strand, within HMPREF1058_RS15885 at 814.209 kb on - strand, within HMPREF1058_RS15885 at 814.240 kb on - strand, within HMPREF1058_RS15885 at 814.357 kb on + strand, within HMPREF1058_RS15885 at 814.358 kb on - strand, within HMPREF1058_RS15885 at 814.358 kb on - strand, within HMPREF1058_RS15885 at 814.358 kb on - strand, within HMPREF1058_RS15885 at 814.361 kb on + strand, within HMPREF1058_RS15885 at 814.397 kb on + strand, within HMPREF1058_RS15885 at 814.397 kb on + strand, within HMPREF1058_RS15885 at 814.453 kb on - strand, within HMPREF1058_RS15885 at 814.494 kb on - strand, within HMPREF1058_RS15885 at 814.840 kb on - strand at 814.840 kb on - strand at 814.910 kb on + strand at 814.911 kb on - strand at 814.926 kb on - strand at 814.944 kb on - strand at 814.957 kb on + strand at 815.040 kb on - strand at 815.059 kb on - strand, within HMPREF1058_RS15880 at 815.074 kb on - strand, within HMPREF1058_RS15880 at 815.080 kb on + strand, within HMPREF1058_RS15880 at 815.088 kb on + strand, within HMPREF1058_RS15880 at 815.088 kb on + strand, within HMPREF1058_RS15880 at 815.112 kb on - strand, within HMPREF1058_RS15880 at 815.230 kb on + strand, within HMPREF1058_RS15880 at 815.294 kb on + strand, within HMPREF1058_RS15880 at 815.295 kb on - strand, within HMPREF1058_RS15880 at 815.295 kb on - strand, within HMPREF1058_RS15880 at 815.310 kb on - strand, within HMPREF1058_RS15880 at 815.405 kb on - strand, within HMPREF1058_RS15880 at 815.408 kb on + strand, within HMPREF1058_RS15880 at 815.463 kb on + strand, within HMPREF1058_RS15880 at 815.671 kb on + strand, within HMPREF1058_RS15880 at 815.672 kb on - strand, within HMPREF1058_RS15880 at 815.672 kb on - strand, within HMPREF1058_RS15880 at 815.675 kb on + strand, within HMPREF1058_RS15880 at 815.675 kb on + strand, within HMPREF1058_RS15880 at 815.676 kb on - strand, within HMPREF1058_RS15880 at 815.676 kb on - strand, within HMPREF1058_RS15880 at 815.676 kb on - strand, within HMPREF1058_RS15880 at 815.684 kb on + strand, within HMPREF1058_RS15880 at 815.700 kb on + strand, within HMPREF1058_RS15880 at 815.813 kb on + strand, within HMPREF1058_RS15880 at 815.814 kb on - strand, within HMPREF1058_RS15880 at 815.835 kb on - strand, within HMPREF1058_RS15880 at 815.835 kb on - strand, within HMPREF1058_RS15880 at 815.855 kb on + strand, within HMPREF1058_RS15880 at 815.856 kb on - strand, within HMPREF1058_RS15880 at 815.861 kb on + strand, within HMPREF1058_RS15880 at 815.862 kb on - strand, within HMPREF1058_RS15880 at 815.912 kb on + strand at 815.935 kb on + strand at 816.150 kb on + strand, within HMPREF1058_RS15875 at 816.181 kb on + strand, within HMPREF1058_RS15875 at 816.181 kb on + strand, within HMPREF1058_RS15875 at 816.233 kb on + strand, within HMPREF1058_RS15875 at 816.234 kb on - strand, within HMPREF1058_RS15875 at 816.278 kb on - strand, within HMPREF1058_RS15875 at 816.278 kb on - strand, within HMPREF1058_RS15875 at 816.280 kb on - strand, within HMPREF1058_RS15875 at 816.316 kb on - strand, within HMPREF1058_RS15875 at 816.435 kb on + strand, within HMPREF1058_RS15875 at 816.467 kb on - strand, within HMPREF1058_RS15875 at 816.589 kb on + strand, within HMPREF1058_RS15875 at 816.593 kb on + strand, within HMPREF1058_RS15875 at 816.639 kb on + strand, within HMPREF1058_RS15875 at 816.640 kb on - strand, within HMPREF1058_RS15875 at 816.740 kb on - strand, within HMPREF1058_RS15875 at 816.766 kb on - strand, within HMPREF1058_RS15875 at 816.816 kb on - strand, within HMPREF1058_RS15875 at 816.863 kb on + strand, within HMPREF1058_RS15875 at 816.864 kb on - strand, within HMPREF1058_RS15875
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 813,960 + HMPREF1058_RS15885 0.12 -2.9 814,172 + HMPREF1058_RS15885 0.31 -4.8 814,172 + HMPREF1058_RS15885 0.31 -1.7 814,172 + +1.6 814,205 + HMPREF1058_RS15885 0.34 -0.3 814,208 + HMPREF1058_RS15885 0.34 -2.4 814,209 - HMPREF1058_RS15885 0.34 -1.3 814,240 - HMPREF1058_RS15885 0.37 -1.3 814,357 + HMPREF1058_RS15885 0.48 -1.9 814,358 - HMPREF1058_RS15885 0.48 -4.4 814,358 - HMPREF1058_RS15885 0.48 -3.6 814,358 - HMPREF1058_RS15885 0.48 -4.3 814,361 + HMPREF1058_RS15885 0.48 -0.8 814,397 + HMPREF1058_RS15885 0.51 -2.8 814,397 + HMPREF1058_RS15885 0.51 -3.0 814,453 - HMPREF1058_RS15885 0.56 -3.6 814,494 - HMPREF1058_RS15885 0.60 -2.5 814,840 - -2.8 814,840 - -0.8 814,910 + -5.1 814,911 - -1.0 814,926 - -3.9 814,944 - -3.6 814,957 + -2.7 815,040 - -1.4 815,059 - HMPREF1058_RS15880 0.11 -2.1 815,074 - HMPREF1058_RS15880 0.12 -2.7 815,080 + HMPREF1058_RS15880 0.13 -1.9 815,088 + HMPREF1058_RS15880 0.14 -2.4 815,088 + HMPREF1058_RS15880 0.14 -3.5 815,112 - HMPREF1058_RS15880 0.16 -2.4 815,230 + HMPREF1058_RS15880 0.27 -1.8 815,294 + HMPREF1058_RS15880 0.33 -1.8 815,295 - HMPREF1058_RS15880 0.33 -3.3 815,295 - HMPREF1058_RS15880 0.33 -1.2 815,310 - HMPREF1058_RS15880 0.35 -3.9 815,405 - HMPREF1058_RS15880 0.44 -2.4 815,408 + HMPREF1058_RS15880 0.44 -4.8 815,463 + HMPREF1058_RS15880 0.50 +0.6 815,671 + HMPREF1058_RS15880 0.70 -1.9 815,672 - HMPREF1058_RS15880 0.70 -3.0 815,672 - HMPREF1058_RS15880 0.70 -3.2 815,675 + HMPREF1058_RS15880 0.70 -4.0 815,675 + HMPREF1058_RS15880 0.70 -3.2 815,676 - HMPREF1058_RS15880 0.70 -2.8 815,676 - HMPREF1058_RS15880 0.70 -0.8 815,676 - HMPREF1058_RS15880 0.70 -2.7 815,684 + HMPREF1058_RS15880 0.71 -2.2 815,700 + HMPREF1058_RS15880 0.72 -2.7 815,813 + HMPREF1058_RS15880 0.83 -1.4 815,814 - HMPREF1058_RS15880 0.83 -1.0 815,835 - HMPREF1058_RS15880 0.85 -0.3 815,835 - HMPREF1058_RS15880 0.85 -3.4 815,855 + HMPREF1058_RS15880 0.87 -0.8 815,856 - HMPREF1058_RS15880 0.87 -2.4 815,861 + HMPREF1058_RS15880 0.88 -2.7 815,862 - HMPREF1058_RS15880 0.88 -1.5 815,912 + -1.7 815,935 + -2.7 816,150 + HMPREF1058_RS15875 0.12 -4.9 816,181 + HMPREF1058_RS15875 0.15 -3.2 816,181 + HMPREF1058_RS15875 0.15 -0.6 816,233 + HMPREF1058_RS15875 0.19 -2.1 816,234 - HMPREF1058_RS15875 0.19 -1.6 816,278 - HMPREF1058_RS15875 0.22 -3.7 816,278 - HMPREF1058_RS15875 0.22 +0.7 816,280 - HMPREF1058_RS15875 0.23 -1.4 816,316 - HMPREF1058_RS15875 0.25 -3.2 816,435 + HMPREF1058_RS15875 0.35 -2.7 816,467 - HMPREF1058_RS15875 0.37 -2.6 816,589 + HMPREF1058_RS15875 0.47 -0.8 816,593 + HMPREF1058_RS15875 0.47 -1.1 816,639 + HMPREF1058_RS15875 0.51 -2.9 816,640 - HMPREF1058_RS15875 0.51 -3.8 816,740 - HMPREF1058_RS15875 0.59 -1.6 816,766 - HMPREF1058_RS15875 0.61 -0.4 816,816 - HMPREF1058_RS15875 0.64 -1.7 816,863 + HMPREF1058_RS15875 0.68 -4.3 816,864 - HMPREF1058_RS15875 0.68 -1.6
Or see this region's nucleotide sequence