Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15875 and HMPREF1058_RS15870 are separated by 49 nucleotides HMPREF1058_RS15870 and HMPREF1058_RS15865 are separated by 228 nucleotides HMPREF1058_RS15865 and HMPREF1058_RS15860 are separated by 10 nucleotides
HMPREF1058_RS15875: HMPREF1058_RS15875 - histidinol dehydrogenase, at 815,990 to 817,270
_RS15875
HMPREF1058_RS15870: HMPREF1058_RS15870 - ATP phosphoribosyltransferase, at 817,320 to 818,171
_RS15870
HMPREF1058_RS15865: HMPREF1058_RS15865 - PaaI family thioesterase, at 818,400 to 818,891
_RS15865
HMPREF1058_RS15860: HMPREF1058_RS15860 - Dabb family protein, at 818,902 to 819,201
_RS15860
Position (kb) 817
818
819 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 816.435 kb on + strand, within HMPREF1058_RS15875 at 816.467 kb on - strand, within HMPREF1058_RS15875 at 816.589 kb on + strand, within HMPREF1058_RS15875 at 816.593 kb on + strand, within HMPREF1058_RS15875 at 816.639 kb on + strand, within HMPREF1058_RS15875 at 816.640 kb on - strand, within HMPREF1058_RS15875 at 816.740 kb on - strand, within HMPREF1058_RS15875 at 816.766 kb on - strand, within HMPREF1058_RS15875 at 816.816 kb on - strand, within HMPREF1058_RS15875 at 816.863 kb on + strand, within HMPREF1058_RS15875 at 816.864 kb on - strand, within HMPREF1058_RS15875 at 817.028 kb on - strand, within HMPREF1058_RS15875 at 817.111 kb on + strand, within HMPREF1058_RS15875 at 817.111 kb on + strand, within HMPREF1058_RS15875 at 817.255 kb on - strand at 817.270 kb on + strand at 817.271 kb on - strand at 817.276 kb on + strand at 817.277 kb on - strand at 817.284 kb on + strand at 817.321 kb on + strand at 817.421 kb on + strand, within HMPREF1058_RS15870 at 817.421 kb on + strand, within HMPREF1058_RS15870 at 817.421 kb on + strand, within HMPREF1058_RS15870 at 817.422 kb on - strand, within HMPREF1058_RS15870 at 817.422 kb on - strand, within HMPREF1058_RS15870 at 817.535 kb on - strand, within HMPREF1058_RS15870 at 817.535 kb on - strand, within HMPREF1058_RS15870 at 817.620 kb on - strand, within HMPREF1058_RS15870 at 817.688 kb on + strand, within HMPREF1058_RS15870 at 817.689 kb on - strand, within HMPREF1058_RS15870 at 817.689 kb on - strand, within HMPREF1058_RS15870 at 817.715 kb on + strand, within HMPREF1058_RS15870 at 817.822 kb on + strand, within HMPREF1058_RS15870 at 817.839 kb on - strand, within HMPREF1058_RS15870 at 817.881 kb on - strand, within HMPREF1058_RS15870 at 817.881 kb on - strand, within HMPREF1058_RS15870 at 817.884 kb on + strand, within HMPREF1058_RS15870 at 818.064 kb on + strand, within HMPREF1058_RS15870 at 818.204 kb on + strand at 818.215 kb on + strand at 818.242 kb on + strand at 818.242 kb on + strand at 818.244 kb on + strand at 818.247 kb on + strand at 818.247 kb on + strand at 818.248 kb on - strand at 818.248 kb on - strand at 818.355 kb on - strand at 818.407 kb on - strand at 818.526 kb on - strand, within HMPREF1058_RS15865 at 818.531 kb on - strand, within HMPREF1058_RS15865 at 818.550 kb on + strand, within HMPREF1058_RS15865 at 818.556 kb on - strand, within HMPREF1058_RS15865 at 818.648 kb on + strand, within HMPREF1058_RS15865 at 818.732 kb on + strand, within HMPREF1058_RS15865 at 818.774 kb on + strand, within HMPREF1058_RS15865 at 818.774 kb on + strand, within HMPREF1058_RS15865 at 818.779 kb on - strand, within HMPREF1058_RS15865 at 818.849 kb on + strand at 818.849 kb on + strand at 818.850 kb on - strand at 818.891 kb on + strand at 818.903 kb on + strand at 818.913 kb on - strand at 819.074 kb on - strand, within HMPREF1058_RS15860 at 819.074 kb on - strand, within HMPREF1058_RS15860 at 819.084 kb on + strand, within HMPREF1058_RS15860 at 819.091 kb on + strand, within HMPREF1058_RS15860 at 819.124 kb on - strand, within HMPREF1058_RS15860
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 816,435 + HMPREF1058_RS15875 0.35 -2.7 816,467 - HMPREF1058_RS15875 0.37 -2.6 816,589 + HMPREF1058_RS15875 0.47 -0.8 816,593 + HMPREF1058_RS15875 0.47 -1.1 816,639 + HMPREF1058_RS15875 0.51 -2.9 816,640 - HMPREF1058_RS15875 0.51 -3.8 816,740 - HMPREF1058_RS15875 0.59 -1.6 816,766 - HMPREF1058_RS15875 0.61 -0.4 816,816 - HMPREF1058_RS15875 0.64 -1.7 816,863 + HMPREF1058_RS15875 0.68 -4.3 816,864 - HMPREF1058_RS15875 0.68 -1.6 817,028 - HMPREF1058_RS15875 0.81 -2.0 817,111 + HMPREF1058_RS15875 0.88 -1.0 817,111 + HMPREF1058_RS15875 0.88 -2.6 817,255 - -1.6 817,270 + -3.4 817,271 - -2.0 817,276 + -1.5 817,277 - +1.1 817,284 + -0.3 817,321 + -4.5 817,421 + HMPREF1058_RS15870 0.12 -2.9 817,421 + HMPREF1058_RS15870 0.12 -4.3 817,421 + HMPREF1058_RS15870 0.12 -1.4 817,422 - HMPREF1058_RS15870 0.12 -0.8 817,422 - HMPREF1058_RS15870 0.12 -1.0 817,535 - HMPREF1058_RS15870 0.25 -3.6 817,535 - HMPREF1058_RS15870 0.25 -1.5 817,620 - HMPREF1058_RS15870 0.35 -3.3 817,688 + HMPREF1058_RS15870 0.43 -3.1 817,689 - HMPREF1058_RS15870 0.43 -1.8 817,689 - HMPREF1058_RS15870 0.43 -0.8 817,715 + HMPREF1058_RS15870 0.46 -3.8 817,822 + HMPREF1058_RS15870 0.59 -2.3 817,839 - HMPREF1058_RS15870 0.61 -3.2 817,881 - HMPREF1058_RS15870 0.66 -4.4 817,881 - HMPREF1058_RS15870 0.66 -1.4 817,884 + HMPREF1058_RS15870 0.66 -2.8 818,064 + HMPREF1058_RS15870 0.87 -1.8 818,204 + -1.4 818,215 + -4.3 818,242 + -3.3 818,242 + -1.5 818,244 + -4.5 818,247 + -5.2 818,247 + -2.4 818,248 - -0.5 818,248 - +1.4 818,355 - +0.3 818,407 - +1.0 818,526 - HMPREF1058_RS15865 0.26 -0.6 818,531 - HMPREF1058_RS15865 0.27 +0.2 818,550 + HMPREF1058_RS15865 0.30 -0.2 818,556 - HMPREF1058_RS15865 0.32 +0.9 818,648 + HMPREF1058_RS15865 0.50 +0.1 818,732 + HMPREF1058_RS15865 0.67 +1.3 818,774 + HMPREF1058_RS15865 0.76 -1.7 818,774 + HMPREF1058_RS15865 0.76 +0.1 818,779 - HMPREF1058_RS15865 0.77 -0.0 818,849 + +0.6 818,849 + +0.6 818,850 - +0.3 818,891 + +0.2 818,903 + +1.3 818,913 - -0.1 819,074 - HMPREF1058_RS15860 0.57 +1.2 819,074 - HMPREF1058_RS15860 0.57 +0.7 819,084 + HMPREF1058_RS15860 0.61 -2.8 819,091 + HMPREF1058_RS15860 0.63 -0.4 819,124 - HMPREF1058_RS15860 0.74 +0.4
Or see this region's nucleotide sequence