Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15650 and HMPREF1058_RS15645 are separated by 75 nucleotides HMPREF1058_RS15645 and HMPREF1058_RS15640 are separated by 70 nucleotides HMPREF1058_RS15640 and HMPREF1058_RS15635 are separated by 39 nucleotides
HMPREF1058_RS15650: HMPREF1058_RS15650 - sodium:solute symporter, at 865,719 to 867,461
_RS15650
HMPREF1058_RS15645: HMPREF1058_RS15645 - NUDIX hydrolase, at 867,537 to 868,214
_RS15645
HMPREF1058_RS15640: HMPREF1058_RS15640 - L-ribulose-5-phosphate 4-epimerase, at 868,285 to 868,971
_RS15640
HMPREF1058_RS15635: HMPREF1058_RS15635 - L-arabinose isomerase, at 869,011 to 870,540
_RS15635
Position (kb) 867
868
869 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 866.645 kb on + strand, within HMPREF1058_RS15650 at 866.646 kb on - strand, within HMPREF1058_RS15650 at 866.646 kb on - strand, within HMPREF1058_RS15650 at 866.708 kb on - strand, within HMPREF1058_RS15650 at 866.750 kb on + strand, within HMPREF1058_RS15650 at 866.770 kb on + strand, within HMPREF1058_RS15650 at 866.812 kb on + strand, within HMPREF1058_RS15650 at 866.813 kb on - strand, within HMPREF1058_RS15650 at 866.862 kb on - strand, within HMPREF1058_RS15650 at 866.927 kb on + strand, within HMPREF1058_RS15650 at 866.931 kb on + strand, within HMPREF1058_RS15650 at 866.932 kb on - strand, within HMPREF1058_RS15650 at 866.932 kb on - strand, within HMPREF1058_RS15650 at 866.960 kb on - strand, within HMPREF1058_RS15650 at 866.966 kb on - strand, within HMPREF1058_RS15650 at 867.070 kb on + strand, within HMPREF1058_RS15650 at 867.083 kb on + strand, within HMPREF1058_RS15650 at 867.084 kb on - strand, within HMPREF1058_RS15650 at 867.133 kb on + strand, within HMPREF1058_RS15650 at 867.143 kb on - strand, within HMPREF1058_RS15650 at 867.167 kb on + strand, within HMPREF1058_RS15650 at 867.168 kb on - strand, within HMPREF1058_RS15650 at 867.263 kb on - strand, within HMPREF1058_RS15650 at 867.274 kb on + strand, within HMPREF1058_RS15650 at 867.275 kb on - strand, within HMPREF1058_RS15650 at 867.275 kb on - strand, within HMPREF1058_RS15650 at 867.275 kb on - strand, within HMPREF1058_RS15650 at 867.289 kb on + strand at 867.301 kb on + strand at 867.302 kb on - strand at 867.363 kb on + strand at 867.364 kb on - strand at 867.422 kb on - strand at 867.422 kb on - strand at 867.444 kb on + strand at 867.445 kb on - strand at 867.445 kb on - strand at 867.445 kb on - strand at 867.459 kb on + strand at 867.505 kb on - strand at 867.546 kb on + strand at 867.549 kb on + strand at 867.575 kb on - strand at 867.581 kb on - strand at 867.617 kb on - strand, within HMPREF1058_RS15645 at 867.758 kb on + strand, within HMPREF1058_RS15645 at 867.758 kb on + strand, within HMPREF1058_RS15645 at 867.759 kb on - strand, within HMPREF1058_RS15645 at 867.825 kb on + strand, within HMPREF1058_RS15645 at 867.826 kb on - strand, within HMPREF1058_RS15645 at 867.979 kb on - strand, within HMPREF1058_RS15645 at 867.979 kb on - strand, within HMPREF1058_RS15645 at 867.979 kb on - strand, within HMPREF1058_RS15645 at 868.040 kb on - strand, within HMPREF1058_RS15645 at 868.040 kb on - strand, within HMPREF1058_RS15645 at 868.053 kb on + strand, within HMPREF1058_RS15645 at 868.158 kb on + strand at 868.159 kb on - strand at 868.159 kb on - strand at 868.173 kb on - strand at 868.254 kb on - strand at 868.401 kb on - strand, within HMPREF1058_RS15640 at 868.426 kb on + strand, within HMPREF1058_RS15640 at 868.427 kb on - strand, within HMPREF1058_RS15640 at 868.524 kb on - strand, within HMPREF1058_RS15640 at 868.530 kb on - strand, within HMPREF1058_RS15640 at 868.533 kb on + strand, within HMPREF1058_RS15640 at 868.562 kb on + strand, within HMPREF1058_RS15640 at 868.563 kb on - strand, within HMPREF1058_RS15640 at 868.567 kb on - strand, within HMPREF1058_RS15640 at 868.579 kb on + strand, within HMPREF1058_RS15640 at 868.580 kb on - strand, within HMPREF1058_RS15640 at 868.580 kb on - strand, within HMPREF1058_RS15640 at 868.580 kb on - strand, within HMPREF1058_RS15640 at 868.580 kb on - strand, within HMPREF1058_RS15640 at 868.580 kb on - strand, within HMPREF1058_RS15640 at 868.665 kb on + strand, within HMPREF1058_RS15640 at 868.692 kb on - strand, within HMPREF1058_RS15640 at 868.757 kb on + strand, within HMPREF1058_RS15640 at 868.761 kb on + strand, within HMPREF1058_RS15640 at 868.776 kb on - strand, within HMPREF1058_RS15640 at 868.827 kb on - strand, within HMPREF1058_RS15640 at 868.831 kb on - strand, within HMPREF1058_RS15640 at 868.896 kb on - strand, within HMPREF1058_RS15640 at 868.954 kb on + strand at 868.985 kb on + strand at 868.997 kb on + strand at 869.004 kb on + strand at 869.040 kb on - strand at 869.086 kb on - strand at 869.088 kb on - strand at 869.156 kb on + strand at 869.160 kb on - strand at 869.161 kb on + strand at 869.163 kb on + strand at 869.163 kb on + strand at 869.163 kb on + strand at 869.184 kb on + strand, within HMPREF1058_RS15635 at 869.185 kb on - strand, within HMPREF1058_RS15635 at 869.185 kb on - strand, within HMPREF1058_RS15635
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 866,645 + HMPREF1058_RS15650 0.53 -1.0 866,646 - HMPREF1058_RS15650 0.53 -2.1 866,646 - HMPREF1058_RS15650 0.53 -2.4 866,708 - HMPREF1058_RS15650 0.57 -0.6 866,750 + HMPREF1058_RS15650 0.59 -2.6 866,770 + HMPREF1058_RS15650 0.60 +0.7 866,812 + HMPREF1058_RS15650 0.63 +1.6 866,813 - HMPREF1058_RS15650 0.63 -0.5 866,862 - HMPREF1058_RS15650 0.66 +1.0 866,927 + HMPREF1058_RS15650 0.69 -1.1 866,931 + HMPREF1058_RS15650 0.70 +0.3 866,932 - HMPREF1058_RS15650 0.70 -0.2 866,932 - HMPREF1058_RS15650 0.70 -1.0 866,960 - HMPREF1058_RS15650 0.71 -1.3 866,966 - HMPREF1058_RS15650 0.72 -2.1 867,070 + HMPREF1058_RS15650 0.78 -3.5 867,083 + HMPREF1058_RS15650 0.78 +0.0 867,084 - HMPREF1058_RS15650 0.78 -1.0 867,133 + HMPREF1058_RS15650 0.81 -0.8 867,143 - HMPREF1058_RS15650 0.82 +0.7 867,167 + HMPREF1058_RS15650 0.83 +0.1 867,168 - HMPREF1058_RS15650 0.83 +0.6 867,263 - HMPREF1058_RS15650 0.89 -2.1 867,274 + HMPREF1058_RS15650 0.89 +2.6 867,275 - HMPREF1058_RS15650 0.89 -2.3 867,275 - HMPREF1058_RS15650 0.89 +0.8 867,275 - HMPREF1058_RS15650 0.89 -0.6 867,289 + +0.6 867,301 + -3.0 867,302 - +3.6 867,363 + -0.8 867,364 - -0.4 867,422 - -0.4 867,422 - +0.7 867,444 + +0.2 867,445 - +1.0 867,445 - +1.0 867,445 - +0.2 867,459 + -2.2 867,505 - -0.9 867,546 + +0.3 867,549 + -0.3 867,575 - -2.9 867,581 - -0.9 867,617 - HMPREF1058_RS15645 0.12 -2.1 867,758 + HMPREF1058_RS15645 0.33 -1.8 867,758 + HMPREF1058_RS15645 0.33 -1.5 867,759 - HMPREF1058_RS15645 0.33 -2.1 867,825 + HMPREF1058_RS15645 0.42 -2.3 867,826 - HMPREF1058_RS15645 0.43 -0.0 867,979 - HMPREF1058_RS15645 0.65 -0.4 867,979 - HMPREF1058_RS15645 0.65 -2.7 867,979 - HMPREF1058_RS15645 0.65 -3.0 868,040 - HMPREF1058_RS15645 0.74 -2.2 868,040 - HMPREF1058_RS15645 0.74 -3.0 868,053 + HMPREF1058_RS15645 0.76 -0.8 868,158 + +0.6 868,159 - +0.7 868,159 - -0.4 868,173 - -0.2 868,254 - +0.1 868,401 - HMPREF1058_RS15640 0.17 -1.8 868,426 + HMPREF1058_RS15640 0.21 -1.2 868,427 - HMPREF1058_RS15640 0.21 -2.5 868,524 - HMPREF1058_RS15640 0.35 -0.7 868,530 - HMPREF1058_RS15640 0.36 -0.0 868,533 + HMPREF1058_RS15640 0.36 +0.4 868,562 + HMPREF1058_RS15640 0.40 -1.0 868,563 - HMPREF1058_RS15640 0.40 -1.5 868,567 - HMPREF1058_RS15640 0.41 -2.4 868,579 + HMPREF1058_RS15640 0.43 -3.9 868,580 - HMPREF1058_RS15640 0.43 -1.2 868,580 - HMPREF1058_RS15640 0.43 -0.1 868,580 - HMPREF1058_RS15640 0.43 -2.2 868,580 - HMPREF1058_RS15640 0.43 -0.1 868,580 - HMPREF1058_RS15640 0.43 -0.6 868,665 + HMPREF1058_RS15640 0.55 +0.6 868,692 - HMPREF1058_RS15640 0.59 -2.1 868,757 + HMPREF1058_RS15640 0.69 -2.8 868,761 + HMPREF1058_RS15640 0.69 -0.3 868,776 - HMPREF1058_RS15640 0.71 -1.0 868,827 - HMPREF1058_RS15640 0.79 -0.6 868,831 - HMPREF1058_RS15640 0.79 -1.8 868,896 - HMPREF1058_RS15640 0.89 -2.2 868,954 + -0.0 868,985 + -0.4 868,997 + +1.6 869,004 + +0.3 869,040 - -1.0 869,086 - +1.7 869,088 - -1.0 869,156 + -2.7 869,160 - +0.5 869,161 + -1.3 869,163 + -2.4 869,163 + -0.6 869,163 + +0.1 869,184 + HMPREF1058_RS15635 0.11 -2.8 869,185 - HMPREF1058_RS15635 0.11 -0.0 869,185 - HMPREF1058_RS15635 0.11 -0.6
Or see this region's nucleotide sequence