Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15440 and HMPREF1058_RS15435 overlap by 9 nucleotides HMPREF1058_RS15435 and HMPREF1058_RS15430 are separated by 125 nucleotides
HMPREF1058_RS15440: HMPREF1058_RS15440 - tetratricopeptide repeat protein, at 920,691 to 922,868
_RS15440
HMPREF1058_RS15435: HMPREF1058_RS15435 - hypothetical protein, at 922,860 to 923,681
_RS15435
HMPREF1058_RS15430: HMPREF1058_RS15430 - aspartate-alanine antiporter, at 923,807 to 925,507
_RS15430
Position (kb) 922
923
924 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 922.035 kb on + strand, within HMPREF1058_RS15440 at 922.036 kb on - strand, within HMPREF1058_RS15440 at 922.088 kb on - strand, within HMPREF1058_RS15440 at 922.088 kb on - strand, within HMPREF1058_RS15440 at 922.118 kb on - strand, within HMPREF1058_RS15440 at 922.150 kb on + strand, within HMPREF1058_RS15440 at 922.161 kb on + strand, within HMPREF1058_RS15440 at 922.183 kb on - strand, within HMPREF1058_RS15440 at 922.183 kb on - strand, within HMPREF1058_RS15440 at 922.183 kb on - strand, within HMPREF1058_RS15440 at 922.186 kb on + strand, within HMPREF1058_RS15440 at 922.267 kb on + strand, within HMPREF1058_RS15440 at 922.322 kb on - strand, within HMPREF1058_RS15440 at 922.361 kb on + strand, within HMPREF1058_RS15440 at 922.362 kb on - strand, within HMPREF1058_RS15440 at 922.395 kb on - strand, within HMPREF1058_RS15440 at 922.431 kb on + strand, within HMPREF1058_RS15440 at 922.478 kb on - strand, within HMPREF1058_RS15440 at 922.483 kb on + strand, within HMPREF1058_RS15440 at 922.531 kb on - strand, within HMPREF1058_RS15440 at 922.698 kb on + strand at 922.698 kb on + strand at 922.699 kb on - strand at 922.701 kb on + strand at 922.702 kb on - strand at 922.734 kb on + strand at 922.734 kb on + strand at 922.734 kb on + strand at 922.735 kb on - strand at 922.735 kb on - strand at 922.757 kb on - strand at 922.813 kb on + strand at 922.834 kb on + strand at 922.834 kb on + strand at 922.835 kb on - strand at 922.844 kb on + strand at 922.845 kb on - strand at 922.874 kb on + strand at 922.876 kb on + strand at 922.877 kb on - strand at 922.877 kb on - strand at 922.881 kb on + strand at 922.881 kb on + strand at 922.973 kb on + strand, within HMPREF1058_RS15435 at 922.973 kb on + strand, within HMPREF1058_RS15435 at 922.974 kb on - strand, within HMPREF1058_RS15435 at 922.974 kb on - strand, within HMPREF1058_RS15435 at 922.975 kb on + strand, within HMPREF1058_RS15435 at 922.976 kb on - strand, within HMPREF1058_RS15435 at 922.998 kb on - strand, within HMPREF1058_RS15435 at 922.998 kb on - strand, within HMPREF1058_RS15435 at 922.998 kb on - strand, within HMPREF1058_RS15435 at 923.019 kb on + strand, within HMPREF1058_RS15435 at 923.030 kb on + strand, within HMPREF1058_RS15435 at 923.099 kb on - strand, within HMPREF1058_RS15435 at 923.144 kb on - strand, within HMPREF1058_RS15435 at 923.148 kb on - strand, within HMPREF1058_RS15435 at 923.152 kb on + strand, within HMPREF1058_RS15435 at 923.157 kb on - strand, within HMPREF1058_RS15435 at 923.174 kb on + strand, within HMPREF1058_RS15435 at 923.174 kb on + strand, within HMPREF1058_RS15435 at 923.175 kb on - strand, within HMPREF1058_RS15435 at 923.247 kb on + strand, within HMPREF1058_RS15435 at 923.436 kb on - strand, within HMPREF1058_RS15435 at 923.436 kb on - strand, within HMPREF1058_RS15435 at 923.473 kb on - strand, within HMPREF1058_RS15435 at 923.489 kb on - strand, within HMPREF1058_RS15435 at 923.594 kb on - strand, within HMPREF1058_RS15435 at 923.644 kb on - strand at 923.691 kb on - strand at 923.691 kb on - strand at 923.691 kb on - strand at 923.791 kb on - strand at 923.791 kb on - strand at 923.791 kb on - strand at 923.820 kb on + strand at 923.821 kb on - strand at 923.937 kb on + strand at 923.940 kb on + strand at 923.968 kb on + strand at 923.969 kb on - strand at 923.969 kb on - strand at 924.105 kb on + strand, within HMPREF1058_RS15430 at 924.105 kb on + strand, within HMPREF1058_RS15430 at 924.105 kb on + strand, within HMPREF1058_RS15430 at 924.106 kb on - strand, within HMPREF1058_RS15430 at 924.106 kb on - strand, within HMPREF1058_RS15430 at 924.132 kb on + strand, within HMPREF1058_RS15430 at 924.207 kb on + strand, within HMPREF1058_RS15430 at 924.207 kb on + strand, within HMPREF1058_RS15430 at 924.223 kb on + strand, within HMPREF1058_RS15430 at 924.223 kb on + strand, within HMPREF1058_RS15430 at 924.266 kb on - strand, within HMPREF1058_RS15430 at 924.298 kb on - strand, within HMPREF1058_RS15430
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 922,035 + HMPREF1058_RS15440 0.62 -0.4 922,036 - HMPREF1058_RS15440 0.62 -1.2 922,088 - HMPREF1058_RS15440 0.64 +0.2 922,088 - HMPREF1058_RS15440 0.64 -0.4 922,118 - HMPREF1058_RS15440 0.66 +0.4 922,150 + HMPREF1058_RS15440 0.67 -1.9 922,161 + HMPREF1058_RS15440 0.67 -0.5 922,183 - HMPREF1058_RS15440 0.69 +0.4 922,183 - HMPREF1058_RS15440 0.69 -2.1 922,183 - HMPREF1058_RS15440 0.69 -1.1 922,186 + HMPREF1058_RS15440 0.69 -1.5 922,267 + HMPREF1058_RS15440 0.72 -2.7 922,322 - HMPREF1058_RS15440 0.75 +1.8 922,361 + HMPREF1058_RS15440 0.77 +0.2 922,362 - HMPREF1058_RS15440 0.77 -0.5 922,395 - HMPREF1058_RS15440 0.78 -0.5 922,431 + HMPREF1058_RS15440 0.80 -0.0 922,478 - HMPREF1058_RS15440 0.82 -1.3 922,483 + HMPREF1058_RS15440 0.82 -2.1 922,531 - HMPREF1058_RS15440 0.84 -2.1 922,698 + -0.7 922,698 + -1.2 922,699 - -1.6 922,701 + -1.3 922,702 - +1.2 922,734 + -1.5 922,734 + -1.9 922,734 + -2.8 922,735 - -0.8 922,735 - +1.1 922,757 - -0.2 922,813 + -1.1 922,834 + -2.1 922,834 + -0.4 922,835 - -0.6 922,844 + -2.5 922,845 - -0.3 922,874 + -1.6 922,876 + -2.5 922,877 - -0.1 922,877 - -4.8 922,881 + -2.0 922,881 + -2.5 922,973 + HMPREF1058_RS15435 0.14 -1.0 922,973 + HMPREF1058_RS15435 0.14 +0.6 922,974 - HMPREF1058_RS15435 0.14 -4.2 922,974 - HMPREF1058_RS15435 0.14 -3.7 922,975 + HMPREF1058_RS15435 0.14 -0.4 922,976 - HMPREF1058_RS15435 0.14 -3.9 922,998 - HMPREF1058_RS15435 0.17 -1.1 922,998 - HMPREF1058_RS15435 0.17 -2.9 922,998 - HMPREF1058_RS15435 0.17 -2.3 923,019 + HMPREF1058_RS15435 0.19 +0.6 923,030 + HMPREF1058_RS15435 0.21 -0.0 923,099 - HMPREF1058_RS15435 0.29 -3.4 923,144 - HMPREF1058_RS15435 0.35 -0.9 923,148 - HMPREF1058_RS15435 0.35 -3.6 923,152 + HMPREF1058_RS15435 0.36 -1.3 923,157 - HMPREF1058_RS15435 0.36 -2.7 923,174 + HMPREF1058_RS15435 0.38 -0.6 923,174 + HMPREF1058_RS15435 0.38 -0.0 923,175 - HMPREF1058_RS15435 0.38 -2.7 923,247 + HMPREF1058_RS15435 0.47 +0.3 923,436 - HMPREF1058_RS15435 0.70 -1.9 923,436 - HMPREF1058_RS15435 0.70 -3.1 923,473 - HMPREF1058_RS15435 0.75 -2.3 923,489 - HMPREF1058_RS15435 0.77 -1.6 923,594 - HMPREF1058_RS15435 0.89 -1.9 923,644 - -1.0 923,691 - -1.8 923,691 - +0.6 923,691 - +1.1 923,791 - +0.6 923,791 - -0.3 923,791 - -0.4 923,820 + -2.2 923,821 - +0.3 923,937 + -2.8 923,940 + -3.5 923,968 + -3.7 923,969 - -1.5 923,969 - -0.2 924,105 + HMPREF1058_RS15430 0.18 -1.3 924,105 + HMPREF1058_RS15430 0.18 -3.5 924,105 + HMPREF1058_RS15430 0.18 -1.7 924,106 - HMPREF1058_RS15430 0.18 -0.4 924,106 - HMPREF1058_RS15430 0.18 -0.0 924,132 + HMPREF1058_RS15430 0.19 -2.7 924,207 + HMPREF1058_RS15430 0.24 -0.7 924,207 + HMPREF1058_RS15430 0.24 -0.9 924,223 + HMPREF1058_RS15430 0.24 -1.8 924,223 + HMPREF1058_RS15430 0.24 -0.5 924,266 - HMPREF1058_RS15430 0.27 -0.4 924,298 - HMPREF1058_RS15430 0.29 -0.6
Or see this region's nucleotide sequence