Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15395

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
930,706	+		HMPREF1058_RS15405	0.87	-0.2
930,728	+				+0.8
930,732	+				+0.1
930,733	-				-0.3
930,733	-				+0.8
930,737	-				+1.5
930,797	+				+0.5
930,802	+				+1.2
930,895	+				+0.4
930,910	+				-0.4
930,927	+				-0.9
931,669	-				+0.4
931,696	+				-2.2
931,875	+		HMPREF1058_RS15395	0.14	-0.9
931,875	+		HMPREF1058_RS15395	0.14	-0.7
931,915	-		HMPREF1058_RS15395	0.17	-1.7
931,990	+		HMPREF1058_RS15395	0.23	-0.4
932,092	-		HMPREF1058_RS15395	0.30	+0.3
932,320	+		HMPREF1058_RS15395	0.47	-0.7
932,635	-				-1.4
933,053	+				-0.2
933,066	+				+0.5
933,128	+		HMPREF1058_RS15390	0.12	+0.6
933,129	-		HMPREF1058_RS15390	0.12	-1.3
933,129	-		HMPREF1058_RS15390	0.12	+0.6
933,456	-		HMPREF1058_RS15390	0.49	-0.3
933,479	-		HMPREF1058_RS15390	0.51	-0.2
933,611	+		HMPREF1058_RS15390	0.66	-1.6
933,625	-		HMPREF1058_RS15390	0.68	-1.7
933,644	+		HMPREF1058_RS15390	0.70	-0.8
933,850	+				-1.8
933,874	-				-0.1
933,970	+				+1.6
933,984	+				-0.1
933,985	-				-0.2
933,986	+				-0.3
933,986	+				+0.4
933,987	-				+0.9
933,987	-				-0.1
933,988	+				-1.2
933,988	+				+1.8
933,988	+				-0.5
933,990	+				+2.6
933,990	+				+0.4
933,991	-				+0.5
933,991	-				+0.0
933,991	-				+0.6
933,999	+				-0.0
934,000	-				+0.3
934,001	+				-1.8
934,001	+				+1.4
934,002	-				+1.5
934,002	-				-0.9
934,002	-				-1.8