Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14785

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS14790 and HMPREF1058_RS14785 are separated by 19 nucleotidesHMPREF1058_RS14785 and HMPREF1058_RS14780 are separated by 202 nucleotides HMPREF1058_RS14790: HMPREF1058_RS14790 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 1,102,025 to 1,103,209 _RS14790 HMPREF1058_RS14785: HMPREF1058_RS14785 - bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II, at 1,103,229 to 1,104,296 _RS14785 HMPREF1058_RS14780: HMPREF1058_RS14780 - exo-alpha-sialidase, at 1,104,499 to 1,106,208 _RS14780 Position (kb) 1103 1104 1105Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1102.312 kb on - strand, within HMPREF1058_RS14790at 1102.432 kb on + strand, within HMPREF1058_RS14790at 1102.432 kb on + strand, within HMPREF1058_RS14790at 1102.433 kb on - strand, within HMPREF1058_RS14790at 1102.437 kb on - strand, within HMPREF1058_RS14790at 1102.437 kb on - strand, within HMPREF1058_RS14790at 1102.446 kb on + strand, within HMPREF1058_RS14790at 1102.447 kb on - strand, within HMPREF1058_RS14790at 1102.450 kb on + strand, within HMPREF1058_RS14790at 1102.451 kb on - strand, within HMPREF1058_RS14790at 1102.568 kb on + strand, within HMPREF1058_RS14790at 1102.645 kb on + strand, within HMPREF1058_RS14790at 1102.646 kb on - strand, within HMPREF1058_RS14790at 1102.646 kb on - strand, within HMPREF1058_RS14790at 1102.656 kb on + strand, within HMPREF1058_RS14790at 1102.702 kb on + strand, within HMPREF1058_RS14790at 1102.703 kb on - strand, within HMPREF1058_RS14790at 1102.750 kb on + strand, within HMPREF1058_RS14790at 1102.814 kb on - strand, within HMPREF1058_RS14790at 1102.816 kb on - strand, within HMPREF1058_RS14790at 1102.816 kb on - strand, within HMPREF1058_RS14790at 1102.816 kb on - strand, within HMPREF1058_RS14790at 1102.840 kb on + strand, within HMPREF1058_RS14790at 1102.843 kb on + strand, within HMPREF1058_RS14790at 1102.892 kb on + strand, within HMPREF1058_RS14790at 1102.893 kb on - strand, within HMPREF1058_RS14790at 1102.935 kb on + strand, within HMPREF1058_RS14790at 1102.935 kb on + strand, within HMPREF1058_RS14790at 1102.935 kb on + strand, within HMPREF1058_RS14790at 1102.936 kb on - strand, within HMPREF1058_RS14790at 1102.940 kb on - strand, within HMPREF1058_RS14790at 1102.977 kb on + strand, within HMPREF1058_RS14790at 1103.012 kb on - strand, within HMPREF1058_RS14790at 1103.052 kb on + strand, within HMPREF1058_RS14790at 1103.053 kb on - strand, within HMPREF1058_RS14790at 1103.053 kb on - strand, within HMPREF1058_RS14790at 1103.110 kb on + strandat 1103.136 kb on - strandat 1103.144 kb on - strandat 1103.202 kb on + strandat 1103.304 kb on - strandat 1103.343 kb on - strand, within HMPREF1058_RS14785at 1103.475 kb on + strand, within HMPREF1058_RS14785at 1103.475 kb on + strand, within HMPREF1058_RS14785at 1103.475 kb on + strand, within HMPREF1058_RS14785at 1103.475 kb on + strand, within HMPREF1058_RS14785at 1103.476 kb on - strand, within HMPREF1058_RS14785at 1103.476 kb on - strand, within HMPREF1058_RS14785at 1103.476 kb on - strand, within HMPREF1058_RS14785at 1103.491 kb on + strand, within HMPREF1058_RS14785at 1103.532 kb on - strand, within HMPREF1058_RS14785at 1103.615 kb on + strand, within HMPREF1058_RS14785at 1103.621 kb on + strand, within HMPREF1058_RS14785at 1103.752 kb on - strand, within HMPREF1058_RS14785at 1103.887 kb on + strand, within HMPREF1058_RS14785at 1103.902 kb on + strand, within HMPREF1058_RS14785at 1103.979 kb on + strand, within HMPREF1058_RS14785at 1104.096 kb on - strand, within HMPREF1058_RS14785at 1104.141 kb on - strand, within HMPREF1058_RS14785at 1104.152 kb on - strand, within HMPREF1058_RS14785at 1104.370 kb on - strandat 1104.373 kb on + strandat 1104.377 kb on + strandat 1104.421 kb on - strandat 1104.475 kb on - strandat 1104.475 kb on - strandat 1104.489 kb on + strandat 1104.493 kb on + strandat 1104.564 kb on - strandat 1104.564 kb on - strandat 1104.569 kb on - strandat 1104.708 kb on + strand, within HMPREF1058_RS14780at 1104.709 kb on - strand, within HMPREF1058_RS14780at 1104.762 kb on + strand, within HMPREF1058_RS14780at 1104.763 kb on - strand, within HMPREF1058_RS14780at 1104.789 kb on + strand, within HMPREF1058_RS14780at 1104.795 kb on + strand, within HMPREF1058_RS14780at 1104.795 kb on + strand, within HMPREF1058_RS14780at 1104.795 kb on + strand, within HMPREF1058_RS14780at 1104.796 kb on - strand, within HMPREF1058_RS14780at 1104.796 kb on - strand, within HMPREF1058_RS14780at 1104.796 kb on - strand, within HMPREF1058_RS14780at 1104.880 kb on + strand, within HMPREF1058_RS14780at 1104.918 kb on + strand, within HMPREF1058_RS14780at 1104.954 kb on + strandat 1104.954 kb on + strand, within HMPREF1058_RS14780at 1104.969 kb on + strand, within HMPREF1058_RS14780at 1104.970 kb on - strand, within HMPREF1058_RS14780at 1104.984 kb on + strand, within HMPREF1058_RS14780at 1105.026 kb on + strand, within HMPREF1058_RS14780at 1105.095 kb on + strand, within HMPREF1058_RS14780at 1105.284 kb on + strand, within HMPREF1058_RS14780at 1105.296 kb on + strand, within HMPREF1058_RS14780at 1105.296 kb on + strand, within HMPREF1058_RS14780

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
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1,102,312 - HMPREF1058_RS14790 0.24 +1.6
1,102,432 + HMPREF1058_RS14790 0.34 -3.5
1,102,432 + HMPREF1058_RS14790 0.34 -1.6
1,102,433 - HMPREF1058_RS14790 0.34 -0.7
1,102,437 - HMPREF1058_RS14790 0.35 -0.8
1,102,437 - HMPREF1058_RS14790 0.35 -0.5
1,102,446 + HMPREF1058_RS14790 0.36 -4.7
1,102,447 - HMPREF1058_RS14790 0.36 -1.8
1,102,450 + HMPREF1058_RS14790 0.36 -2.2
1,102,451 - HMPREF1058_RS14790 0.36 -2.5
1,102,568 + HMPREF1058_RS14790 0.46 -2.6
1,102,645 + HMPREF1058_RS14790 0.52 -1.8
1,102,646 - HMPREF1058_RS14790 0.52 -2.5
1,102,646 - HMPREF1058_RS14790 0.52 -3.3
1,102,656 + HMPREF1058_RS14790 0.53 -0.9
1,102,702 + HMPREF1058_RS14790 0.57 -0.6
1,102,703 - HMPREF1058_RS14790 0.57 -2.4
1,102,750 + HMPREF1058_RS14790 0.61 -4.0
1,102,814 - HMPREF1058_RS14790 0.67 -0.5
1,102,816 - HMPREF1058_RS14790 0.67 -1.1
1,102,816 - HMPREF1058_RS14790 0.67 -2.7
1,102,816 - HMPREF1058_RS14790 0.67 -1.5
1,102,840 + HMPREF1058_RS14790 0.69 -1.2
1,102,843 + HMPREF1058_RS14790 0.69 -2.8
1,102,892 + HMPREF1058_RS14790 0.73 -0.8
1,102,893 - HMPREF1058_RS14790 0.73 -3.9
1,102,935 + HMPREF1058_RS14790 0.77 -1.6
1,102,935 + HMPREF1058_RS14790 0.77 -2.6
1,102,935 + HMPREF1058_RS14790 0.77 -2.5
1,102,936 - HMPREF1058_RS14790 0.77 -1.9
1,102,940 - HMPREF1058_RS14790 0.77 -1.2
1,102,977 + HMPREF1058_RS14790 0.80 -3.2
1,103,012 - HMPREF1058_RS14790 0.83 -3.1
1,103,052 + HMPREF1058_RS14790 0.87 -2.6
1,103,053 - HMPREF1058_RS14790 0.87 -1.4
1,103,053 - HMPREF1058_RS14790 0.87 -1.7
1,103,110 + -1.6
1,103,136 - -3.4
1,103,144 - -2.8
1,103,202 + -0.2
1,103,304 - -1.0
1,103,343 - HMPREF1058_RS14785 0.11 -2.0
1,103,475 + HMPREF1058_RS14785 0.23 -2.1
1,103,475 + HMPREF1058_RS14785 0.23 -3.8
1,103,475 + HMPREF1058_RS14785 0.23 -3.1
1,103,475 + HMPREF1058_RS14785 0.23 -3.6
1,103,476 - HMPREF1058_RS14785 0.23 -2.0
1,103,476 - HMPREF1058_RS14785 0.23 -1.5
1,103,476 - HMPREF1058_RS14785 0.23 -2.1
1,103,491 + HMPREF1058_RS14785 0.25 -0.5
1,103,532 - HMPREF1058_RS14785 0.28 -2.9
1,103,615 + HMPREF1058_RS14785 0.36 -2.0
1,103,621 + HMPREF1058_RS14785 0.37 -1.4
1,103,752 - HMPREF1058_RS14785 0.49 -3.2
1,103,887 + HMPREF1058_RS14785 0.62 -0.8
1,103,902 + HMPREF1058_RS14785 0.63 -1.4
1,103,979 + HMPREF1058_RS14785 0.70 -3.5
1,104,096 - HMPREF1058_RS14785 0.81 -1.8
1,104,141 - HMPREF1058_RS14785 0.85 -2.5
1,104,152 - HMPREF1058_RS14785 0.86 -3.4
1,104,370 - -1.2
1,104,373 + +0.0
1,104,377 + +1.1
1,104,421 - +0.8
1,104,475 - +0.4
1,104,475 - +1.5
1,104,489 + -0.0
1,104,493 + +1.5
1,104,564 - +2.6
1,104,564 - -1.4
1,104,569 - +0.2
1,104,708 + HMPREF1058_RS14780 0.12 +0.2
1,104,709 - HMPREF1058_RS14780 0.12 -0.2
1,104,762 + HMPREF1058_RS14780 0.15 -1.0
1,104,763 - HMPREF1058_RS14780 0.15 -1.8
1,104,789 + HMPREF1058_RS14780 0.17 +0.3
1,104,795 + HMPREF1058_RS14780 0.17 +0.0
1,104,795 + HMPREF1058_RS14780 0.17 -0.7
1,104,795 + HMPREF1058_RS14780 0.17 -2.0
1,104,796 - HMPREF1058_RS14780 0.17 -1.0
1,104,796 - HMPREF1058_RS14780 0.17 +0.1
1,104,796 - HMPREF1058_RS14780 0.17 +0.4
1,104,880 + HMPREF1058_RS14780 0.22 -0.0
1,104,918 + HMPREF1058_RS14780 0.25 -0.8
1,104,954 + +2.6
1,104,954 + HMPREF1058_RS14780 0.27 +0.3
1,104,969 + HMPREF1058_RS14780 0.27 +0.3
1,104,970 - HMPREF1058_RS14780 0.28 -0.0
1,104,984 + HMPREF1058_RS14780 0.28 +0.1
1,105,026 + HMPREF1058_RS14780 0.31 +0.5
1,105,095 + HMPREF1058_RS14780 0.35 +0.5
1,105,284 + HMPREF1058_RS14780 0.46 -2.4
1,105,296 + HMPREF1058_RS14780 0.47 +1.0
1,105,296 + HMPREF1058_RS14780 0.47 +0.8

Or see this region's nucleotide sequence