Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14125

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
1,279,768	-				+1.0
1,279,809	-				-0.7
1,279,831	+				-0.3
1,279,840	+				+0.0
1,279,926	-				-1.1
1,280,002	-		HMPREF1058_RS14130	0.17	-1.0
1,280,044	+		HMPREF1058_RS14130	0.22	+1.2
1,280,059	+				+0.9
1,280,091	+		HMPREF1058_RS14130	0.28	+1.6
1,280,095	-		HMPREF1058_RS14130	0.28	-0.3
1,280,176	+		HMPREF1058_RS14130	0.38	-1.1
1,280,177	-		HMPREF1058_RS14130	0.38	-1.0
1,280,181	+		HMPREF1058_RS14130	0.39	+2.3
1,280,181	+		HMPREF1058_RS14130	0.39	+1.0
1,280,182	-		HMPREF1058_RS14130	0.39	+0.6
1,280,196	-		HMPREF1058_RS14130	0.40	+0.9
1,280,339	+		HMPREF1058_RS14130	0.57	-0.9
1,280,339	+				-0.9
1,280,370	-		HMPREF1058_RS14130	0.61	-1.0
1,280,654	-				-2.3
1,280,655	+				+0.3
1,280,665	-				-1.5
1,280,695	+				+0.0
1,280,702	+				+0.7
1,280,703	-				+0.6
1,280,710	-				-0.8
1,280,712	-				-0.4
1,280,712	-				-0.4
1,280,754	+				+0.1
1,280,754	+				-1.5
1,280,871	+		HMPREF1058_RS14125	0.11	-1.3
1,280,871	+		HMPREF1058_RS14125	0.11	-0.3
1,280,872	-		HMPREF1058_RS14125	0.11	-0.7
1,280,874	-		HMPREF1058_RS14125	0.11	+0.6
1,281,076	-		HMPREF1058_RS14125	0.26	-1.1
1,281,110	+		HMPREF1058_RS14125	0.28	-0.7
1,281,111	-		HMPREF1058_RS14125	0.28	+0.1
1,281,233	+		HMPREF1058_RS14125	0.38	-2.0
1,281,233	+		HMPREF1058_RS14125	0.38	-0.3
1,281,233	+		HMPREF1058_RS14125	0.38	-3.0
1,281,237	+		HMPREF1058_RS14125	0.38	-2.2
1,281,237	+		HMPREF1058_RS14125	0.38	-1.8
1,281,237	+		HMPREF1058_RS14125	0.38	-2.2
1,281,237	+		HMPREF1058_RS14125	0.38	-0.4
1,281,237	+		HMPREF1058_RS14125	0.38	-1.6
1,281,237	+		HMPREF1058_RS14125	0.38	-1.7
1,281,237	+		HMPREF1058_RS14125	0.38	-0.4
1,281,238	-		HMPREF1058_RS14125	0.38	-1.9
1,281,238	-		HMPREF1058_RS14125	0.38	-2.4
1,281,238	-		HMPREF1058_RS14125	0.38	-2.1
1,281,238	-		HMPREF1058_RS14125	0.38	-0.6
1,281,238	-		HMPREF1058_RS14125	0.38	-0.6
1,281,238	-		HMPREF1058_RS14125	0.38	-3.0
1,281,244	-		HMPREF1058_RS14125	0.38	-1.4
1,281,244	-		HMPREF1058_RS14125	0.38	+0.3
1,281,357	+		HMPREF1058_RS14125	0.47	-1.2
1,281,369	+		HMPREF1058_RS14125	0.48	-0.7
1,281,481	-		HMPREF1058_RS14125	0.56	-0.9
1,281,801	+		HMPREF1058_RS14125	0.80	-1.9
1,281,802	-		HMPREF1058_RS14125	0.80	-1.9
1,281,820	+		HMPREF1058_RS14125	0.81	-1.7
1,281,826	+		HMPREF1058_RS14125	0.82	-1.6
1,281,826	+		HMPREF1058_RS14125	0.82	-1.0
1,281,833	-		HMPREF1058_RS14125	0.82	-0.7
1,281,840	+		HMPREF1058_RS14125	0.83	-1.9
1,281,841	-		HMPREF1058_RS14125	0.83	-1.9
1,281,842	+		HMPREF1058_RS14125	0.83	-0.7
1,281,843	-		HMPREF1058_RS14125	0.83	-0.8
1,281,843	-		HMPREF1058_RS14125	0.83	+0.4
1,281,843	-		HMPREF1058_RS14125	0.83	-3.1
1,281,843	-		HMPREF1058_RS14125	0.83	-2.0
1,281,843	-		HMPREF1058_RS14125	0.83	-1.7
1,281,844	+		HMPREF1058_RS14125	0.83	-1.9
1,281,845	-		HMPREF1058_RS14125	0.83	-0.4
1,281,845	-		HMPREF1058_RS14125	0.83	-1.9
1,281,845	-		HMPREF1058_RS14125	0.83	-0.6
1,281,848	+		HMPREF1058_RS14125	0.83	-0.4
1,281,848	+		HMPREF1058_RS14125	0.83	-3.2
1,281,953	-				+1.6
1,281,976	-				-1.3
1,282,026	+				-1.4
1,282,027	-				-1.9
1,282,030	+				-1.0
1,282,031	-				-1.2
1,282,040	+				-0.5
1,282,040	+				-2.1
1,282,040	+				-1.1
1,282,040	+				-2.7
1,282,042	+				-1.0
1,282,043	-				-1.7
1,282,043	-				-0.3
1,282,043	-				-2.7
1,282,087	+				+0.1
1,282,088	-				-0.1
1,282,092	-				+0.2
1,282,169	-				-0.5
1,282,347	+				-2.2
1,282,435	+				-0.9
1,282,435	+				-1.3
1,282,435	+				-0.6
1,282,435	+				-1.2
1,282,436	-				-1.4
1,282,436	-				+1.6
1,282,436	-				-0.8
1,282,444	-				+2.3
1,282,587	+		HMPREF1058_RS14120	0.14	-0.9
1,282,617	+		HMPREF1058_RS14120	0.16	+0.1
1,282,617	+		HMPREF1058_RS14120	0.16	-2.1
1,282,668	+		HMPREF1058_RS14120	0.19	-1.1
1,282,715	+		HMPREF1058_RS14120	0.21	-1.1
1,282,839	-		HMPREF1058_RS14120	0.28	-1.3
1,282,839	-		HMPREF1058_RS14120	0.28	+0.2
1,282,863	-		HMPREF1058_RS14120	0.29	-1.7
1,282,871	+		HMPREF1058_RS14120	0.30	-0.3
1,282,882	+		HMPREF1058_RS14120	0.31	-1.1
1,282,891	+		HMPREF1058_RS14120	0.31	-1.2
1,282,906	+		HMPREF1058_RS14120	0.32	-0.9
1,282,942	+		HMPREF1058_RS14120	0.34	-0.0
1,283,049	-		HMPREF1058_RS14120	0.40	-2.5