Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13970

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
1,315,982	-		HMPREF1058_RS13975	0.22	-0.5
1,315,988	+		HMPREF1058_RS13975	0.22	+0.2
1,315,989	-		HMPREF1058_RS13975	0.23	+1.1
1,316,096	-		HMPREF1058_RS13975	0.33	+0.3
1,316,098	+		HMPREF1058_RS13975	0.33	-1.1
1,316,139	-		HMPREF1058_RS13975	0.37	+0.3
1,316,150	-		HMPREF1058_RS13975	0.38	-1.5
1,316,150	-		HMPREF1058_RS13975	0.38	-0.5
1,316,172	+		HMPREF1058_RS13975	0.40	-0.2
1,316,172	+		HMPREF1058_RS13975	0.40	-0.4
1,316,242	+		HMPREF1058_RS13975	0.47	-0.7
1,316,256	+		HMPREF1058_RS13975	0.48	+0.9
1,316,257	-		HMPREF1058_RS13975	0.48	-0.2
1,316,326	+		HMPREF1058_RS13975	0.55	-0.4
1,316,345	-		HMPREF1058_RS13975	0.56	+0.5
1,316,352	+		HMPREF1058_RS13975	0.57	+0.8
1,316,352	+		HMPREF1058_RS13975	0.57	-0.0
1,316,353	-		HMPREF1058_RS13975	0.57	-0.8
1,316,357	-		HMPREF1058_RS13975	0.57	-1.2
1,316,357	-		HMPREF1058_RS13975	0.57	+0.8
1,316,386	+		HMPREF1058_RS13975	0.60	+0.3
1,316,391	+		HMPREF1058_RS13975	0.61	-0.4
1,316,391	+		HMPREF1058_RS13975	0.61	-0.8
1,316,442	-		HMPREF1058_RS13975	0.66	+1.1
1,316,492	+		HMPREF1058_RS13975	0.70	-0.4
1,316,501	+		HMPREF1058_RS13975	0.71	+0.5
1,316,579	-		HMPREF1058_RS13975	0.79	-1.5
1,316,659	+		HMPREF1058_RS13975	0.86	-1.1
1,316,678	+		HMPREF1058_RS13975	0.88	-0.7
1,316,693	+		HMPREF1058_RS13975	0.89	+0.2
1,316,704	+				-0.5
1,316,704	+				-0.2
1,316,714	+				-0.3
1,316,714	+				+0.8
1,316,715	-				-0.2
1,316,755	+				+0.7
1,316,755	+				-0.4
1,316,798	-				-0.4
1,316,798	-				+1.7
1,316,803	-				+1.0
1,316,812	+				-0.3
1,316,814	+				+0.2
1,316,891	+				-0.4
1,316,892	-				-0.3
1,316,905	+				+0.4
1,316,906	-				-2.3
1,316,908	+				+0.1
1,316,916	+				-0.8
1,316,950	+				-1.6
1,316,953	+				-1.6
1,316,953	+				-0.9
1,316,953	+				-2.0
1,316,957	+				-2.1
1,316,957	+				-1.9
1,317,031	+				+0.5
1,317,403	+		HMPREF1058_RS13970	0.36	-0.9
1,317,414	+		HMPREF1058_RS13970	0.37	+1.0
1,317,430	+		HMPREF1058_RS13970	0.38	-0.0
1,317,575	+		HMPREF1058_RS13970	0.50	-1.6
1,317,623	+		HMPREF1058_RS13970	0.54	+0.2
1,317,954	+		HMPREF1058_RS13970	0.81	-0.8
1,317,959	+		HMPREF1058_RS13970	0.81	-1.0
1,317,963	+		HMPREF1058_RS13970	0.81	-0.0
1,318,142	+				+1.0
1,318,180	-				+0.8
1,318,188	+				-0.5
1,318,190	+				+0.2
1,318,258	+		HMPREF1058_RS13965	0.15	-0.0
1,318,259	-		HMPREF1058_RS13965	0.15	+1.0
1,318,408	-		HMPREF1058_RS13965	0.50	-1.5
1,318,458	-		HMPREF1058_RS13965	0.62	-0.6
1,318,553	-		HMPREF1058_RS13965	0.85	+0.3
1,318,595	-				-1.0
1,318,675	-				-0.5
1,318,676	+				+1.0
1,318,695	+				+0.4
1,318,696	-				-0.5
1,318,696	-				+0.9
1,318,763	-		HMPREF1058_RS13960	0.11	-0.3
1,318,763	-		HMPREF1058_RS13960	0.11	-0.1
1,318,840	+		HMPREF1058_RS13960	0.20	-0.4
1,318,860	-		HMPREF1058_RS13960	0.22	+0.6
1,318,926	+		HMPREF1058_RS13960	0.30	-0.1
1,318,977	-		HMPREF1058_RS13960	0.36	+0.6
1,318,977	-		HMPREF1058_RS13960	0.36	+0.9
1,318,980	+		HMPREF1058_RS13960	0.37	-0.5
1,319,105	+		HMPREF1058_RS13960	0.51	+0.4
1,319,106	-		HMPREF1058_RS13960	0.51	+1.4
1,319,176	-		HMPREF1058_RS13960	0.60	+0.6