Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13795

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
1,359,375	+		HMPREF1058_RS13800	0.56	+1.0
1,359,376	+		HMPREF1058_RS13800	0.56	-0.7
1,359,376	+		HMPREF1058_RS13800	0.56	-0.2
1,359,377	-		HMPREF1058_RS13800	0.56	-1.6
1,359,377	-		HMPREF1058_RS13800	0.56	+1.5
1,359,389	+		HMPREF1058_RS13800	0.57	-0.3
1,359,390	-		HMPREF1058_RS13800	0.57	-0.4
1,359,450	-		HMPREF1058_RS13800	0.60	+1.2
1,359,453	+		HMPREF1058_RS13800	0.60	-0.2
1,359,488	-		HMPREF1058_RS13800	0.62	-0.0
1,359,526	+		HMPREF1058_RS13800	0.64	-1.3
1,359,527	-		HMPREF1058_RS13800	0.64	-1.2
1,359,529	+		HMPREF1058_RS13800	0.64	+0.9
1,359,529	+		HMPREF1058_RS13800	0.64	-0.5
1,359,529	+		HMPREF1058_RS13800	0.64	+0.1
1,359,529	+		HMPREF1058_RS13800	0.64	+0.1
1,359,530	-		HMPREF1058_RS13800	0.65	+1.3
1,359,532	-		HMPREF1058_RS13800	0.65	+0.2
1,359,532	-		HMPREF1058_RS13800	0.65	-0.0
1,359,532	-		HMPREF1058_RS13800	0.65	-0.2
1,359,538	-		HMPREF1058_RS13800	0.65	+1.2
1,359,623	-		HMPREF1058_RS13800	0.69	+0.2
1,359,666	-		HMPREF1058_RS13800	0.72	+2.0
1,359,754	-		HMPREF1058_RS13800	0.76	+1.6
1,359,787	-		HMPREF1058_RS13800	0.78	+0.4
1,359,801	+		HMPREF1058_RS13800	0.79	-0.5
1,359,813	-		HMPREF1058_RS13800	0.79	-1.3
1,359,813	-		HMPREF1058_RS13800	0.79	-0.0
1,359,821	+		HMPREF1058_RS13800	0.80	-0.3
1,359,821	+		HMPREF1058_RS13800	0.80	-1.3
1,359,822	-		HMPREF1058_RS13800	0.80	-0.7
1,359,867	-		HMPREF1058_RS13800	0.82	-0.3
1,359,977	+		HMPREF1058_RS13800	0.88	-0.6
1,359,991	+		HMPREF1058_RS13800	0.89	+0.4
1,360,000	+		HMPREF1058_RS13800	0.89	+0.4
1,360,001	-		HMPREF1058_RS13800	0.89	-0.2
1,360,095	+				-0.6
1,360,102	-				+0.7
1,360,105	+				-0.3
1,360,105	+				-0.3
1,360,106	-				-0.4
1,360,106	-				-0.6
1,360,182	+				-0.0
1,360,185	-				+0.9
1,360,276	-				-1.4
1,360,290	-				-1.0
1,360,290	-				+0.0
1,360,294	-				-0.2
1,360,294	-				-2.2
1,360,294	-				+1.3
1,360,294	-				+0.4
1,360,294	-				+1.4
1,360,297	+				+0.5
1,360,298	-				+0.3
1,360,306	+				-0.2
1,360,359	+				-1.6
1,360,359	+				-3.0
1,360,554	-		HMPREF1058_RS13795	0.10	-0.6
1,360,645	-		HMPREF1058_RS13795	0.15	-2.4
1,360,691	+		HMPREF1058_RS13795	0.17	-0.9
1,360,694	+		HMPREF1058_RS13795	0.17	-0.9
1,360,699	-		HMPREF1058_RS13795	0.17	-0.8
1,360,930	-		HMPREF1058_RS13795	0.29	-0.3
1,361,031	+		HMPREF1058_RS13795	0.34	-1.7
1,361,099	+		HMPREF1058_RS13795	0.38	-3.1
1,361,176	+		HMPREF1058_RS13795	0.41	-1.7
1,361,208	-		HMPREF1058_RS13795	0.43	-2.1
1,361,215	-				-0.8
1,361,303	-		HMPREF1058_RS13795	0.48	+0.5
1,361,381	-		HMPREF1058_RS13795	0.52	-1.1
1,361,381	-		HMPREF1058_RS13795	0.52	-1.4
1,361,388	-		HMPREF1058_RS13795	0.52	-1.8
1,361,388	-		HMPREF1058_RS13795	0.52	-1.0
1,361,388	-		HMPREF1058_RS13795	0.52	-2.9
1,361,388	-		HMPREF1058_RS13795	0.52	-3.3
1,361,391	+				-0.3
1,361,392	-		HMPREF1058_RS13795	0.52	-1.8
1,361,406	+		HMPREF1058_RS13795	0.53	-1.1
1,361,457	+		HMPREF1058_RS13795	0.56	-1.8
1,361,463	+		HMPREF1058_RS13795	0.56	-1.1
1,361,563	-		HMPREF1058_RS13795	0.61	-3.0
1,361,638	+		HMPREF1058_RS13795	0.65	-1.7
1,361,641	-		HMPREF1058_RS13795	0.65	-1.7
1,361,657	-		HMPREF1058_RS13795	0.66	-3.7
1,361,679	+		HMPREF1058_RS13795	0.67	+0.7
1,361,759	-		HMPREF1058_RS13795	0.71	-2.6
1,361,769	+		HMPREF1058_RS13795	0.71	-0.4
1,361,770	-		HMPREF1058_RS13795	0.71	-0.4
1,361,771	+		HMPREF1058_RS13795	0.71	+0.9
1,361,808	+		HMPREF1058_RS13795	0.73	-1.6
1,361,838	-		HMPREF1058_RS13795	0.75	-0.5
1,361,902	-		HMPREF1058_RS13795	0.78	+0.2
1,361,935	-		HMPREF1058_RS13795	0.80	-3.4
1,362,023	-		HMPREF1058_RS13795	0.84	+2.5
1,362,023	-		HMPREF1058_RS13795	0.84	-2.0
1,362,023	-		HMPREF1058_RS13795	0.84	+0.6
1,362,064	+		HMPREF1058_RS13795	0.86	-2.6
1,362,068	+		HMPREF1058_RS13795	0.86	-0.2
1,362,069	-		HMPREF1058_RS13795	0.86	-0.8
1,362,078	+		HMPREF1058_RS13795	0.87	-0.9
1,362,109	+		HMPREF1058_RS13795	0.88	-2.0
1,362,109	+		HMPREF1058_RS13795	0.88	-0.2
1,362,148	-				-1.4
1,362,221	+				-1.3
1,362,225	+				-2.4
1,362,237	+				-1.1
1,362,238	-				-2.6
1,362,350	+				+0.1
1,362,351	-				+0.0
1,362,411	-				+2.5
1,362,431	+				-0.5
1,362,431	+				-0.7
1,362,432	-				+0.4
1,362,432	-				-0.2
1,362,434	-				+0.0
1,362,436	+				-3.5
1,362,458	+				-0.4
1,362,485	-		HMPREF1058_RS13790	0.11	+0.9
1,362,491	-		HMPREF1058_RS13790	0.11	-0.4
1,362,581	+		HMPREF1058_RS13790	0.18	-1.5
1,362,582	-		HMPREF1058_RS13790	0.18	+1.7
1,362,586	-		HMPREF1058_RS13790	0.19	-0.2
1,362,586	-		HMPREF1058_RS13790	0.19	-0.1
1,362,586	-		HMPREF1058_RS13790	0.19	+1.9
1,362,586	-		HMPREF1058_RS13790	0.19	+0.2
1,362,589	+		HMPREF1058_RS13790	0.19	-2.6
1,362,591	+		HMPREF1058_RS13790	0.19	-3.1
1,362,592	-		HMPREF1058_RS13790	0.19	+1.8
1,362,607	+		HMPREF1058_RS13790	0.20	-0.1
1,362,700	+		HMPREF1058_RS13790	0.28	-1.7
1,362,701	-		HMPREF1058_RS13790	0.28	+0.5
1,362,779	+		HMPREF1058_RS13790	0.34	-0.5
1,362,937	+		HMPREF1058_RS13790	0.47	+2.5
1,362,960	-		HMPREF1058_RS13790	0.48	-0.8
1,362,965	-		HMPREF1058_RS13790	0.49	-0.2
1,363,000	+		HMPREF1058_RS13790	0.52	-2.1
1,363,037	-		HMPREF1058_RS13790	0.55	-1.8
1,363,037	-		HMPREF1058_RS13790	0.55	-0.6
1,363,037	-		HMPREF1058_RS13790	0.55	+0.4
1,363,092	-		HMPREF1058_RS13790	0.59	+0.4
1,363,181	-		HMPREF1058_RS13790	0.66	-0.9
1,363,181	-		HMPREF1058_RS13790	0.66	-1.2
1,363,182	+		HMPREF1058_RS13790	0.66	-0.9
1,363,186	+		HMPREF1058_RS13790	0.66	-3.0
1,363,186	+		HMPREF1058_RS13790	0.66	-0.8
1,363,186	+		HMPREF1058_RS13790	0.66	-0.5
1,363,187	-		HMPREF1058_RS13790	0.67	+0.1
1,363,187	-		HMPREF1058_RS13790	0.67	+1.8
1,363,187	-		HMPREF1058_RS13790	0.67	-0.5
1,363,264	+		HMPREF1058_RS13790	0.73	-3.7
1,363,265	-		HMPREF1058_RS13790	0.73	-0.8
1,363,298	+		HMPREF1058_RS13790	0.75	-1.9
1,363,299	-		HMPREF1058_RS13790	0.75	-1.2
1,363,303	+		HMPREF1058_RS13790	0.76	-2.8
1,363,304	-		HMPREF1058_RS13790	0.76	+0.6
1,363,308	-		HMPREF1058_RS13790	0.76	-1.0