Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13635

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
1,413,432	+		HMPREF1058_RS13640	0.50	+0.6
1,413,432	+		HMPREF1058_RS13640	0.50	+0.6
1,413,440	+		HMPREF1058_RS13640	0.51	-1.3
1,413,444	+		HMPREF1058_RS13640	0.51	+0.6
1,413,444	+		HMPREF1058_RS13640	0.51	-0.7
1,413,444	+		HMPREF1058_RS13640	0.51	+0.1
1,413,496	+		HMPREF1058_RS13640	0.55	+1.4
1,413,538	+		HMPREF1058_RS13640	0.57	-0.5
1,413,545	+		HMPREF1058_RS13640	0.58	-0.1
1,413,545	+		HMPREF1058_RS13640	0.58	-0.7
1,413,610	+		HMPREF1058_RS13640	0.62	+0.1
1,413,763	+		HMPREF1058_RS13640	0.72	+4.1
1,413,796	+		HMPREF1058_RS13640	0.74	+0.4
1,413,829	+		HMPREF1058_RS13640	0.77	+0.5
1,414,284	-		HMPREF1058_RS13635	0.28	-1.8
1,414,368	+		HMPREF1058_RS13635	0.45	+0.0
1,414,409	+		HMPREF1058_RS13635	0.53	-1.7
1,414,436	-		HMPREF1058_RS13635	0.58	-1.7
1,414,436	-		HMPREF1058_RS13635	0.58	-0.1
1,414,524	-		HMPREF1058_RS13635	0.76	-2.8
1,414,524	-		HMPREF1058_RS13635	0.76	-1.9
1,414,572	-		HMPREF1058_RS13635	0.86	+0.1
1,414,609	+				-0.5