Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS12505

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
91,597	+		HMPREF1058_RS12510	0.71	-0.3
91,597	+		HMPREF1058_RS12510	0.71	-1.5
91,597	+		HMPREF1058_RS12510	0.71	+0.2
91,598	-		HMPREF1058_RS12510	0.71	+0.2
91,598	-		HMPREF1058_RS12510	0.71	+0.1
91,605	+		HMPREF1058_RS12510	0.72	+1.2
91,647	-				-1.6
91,704	-		HMPREF1058_RS12510	0.83	-1.3
91,719	+		HMPREF1058_RS12510	0.84	-0.8
91,721	+		HMPREF1058_RS12510	0.85	+0.7
91,721	+		HMPREF1058_RS12510	0.85	-0.0
91,752	+		HMPREF1058_RS12510	0.88	-1.3
91,756	+		HMPREF1058_RS12510	0.88	-0.7
91,756	+		HMPREF1058_RS12510	0.88	-0.1
91,757	-		HMPREF1058_RS12510	0.89	-0.3
91,757	-		HMPREF1058_RS12510	0.89	-0.8
91,773	+				-0.8
91,774	-				-0.8
91,800	-				-0.2
91,814	+				-0.1
91,815	-				+1.5
91,862	+				-0.9
91,862	+				-0.2
91,862	+				-0.3
91,863	-				-1.2
91,863	-				-0.9
91,863	-				+0.8
91,863	-				-0.2
91,864	+				-0.3
91,865	-				-0.5
91,865	-				-1.8
91,865	-				-0.4
91,883	-				-0.6
91,967	-				+0.1
92,029	-				-0.7
92,029	-				-0.3
92,035	-				-0.7
92,036	+				-0.4
92,036	+				-1.4
92,037	-				+0.0
92,040	+				-0.6
92,051	-				-0.4
92,052	+				+0.6
92,053	-				-1.3
92,053	-				+0.5
92,055	+				+0.0
92,101	-				+3.1
92,247	+		HMPREF1058_RS0119590	0.17	-0.4
92,247	+		HMPREF1058_RS0119590	0.17	-1.0
92,248	-		HMPREF1058_RS0119590	0.17	-1.0
92,248	-		HMPREF1058_RS0119590	0.17	-0.1
92,248	-		HMPREF1058_RS0119590	0.17	+0.3
92,248	-		HMPREF1058_RS0119590	0.17	+2.1
92,252	+		HMPREF1058_RS0119590	0.19	-2.8
92,253	-		HMPREF1058_RS0119590	0.20	-1.2
92,253	-		HMPREF1058_RS0119590	0.20	-1.2
92,298	-				-1.9
92,307	+		HMPREF1058_RS0119590	0.44	-0.0
92,331	+				-0.2
92,331	+		HMPREF1058_RS0119590	0.54	-1.1
92,331	+		HMPREF1058_RS0119590	0.54	+1.0
92,331	+		HMPREF1058_RS0119590	0.54	+0.2
92,398	-		HMPREF1058_RS0119590	0.84	-1.2
92,398	-		HMPREF1058_RS0119590	0.84	+0.1
92,414	+				-1.0
92,415	-				+0.0
92,433	+				-0.6
92,452	+				-0.7
92,453	-				+0.0
92,508	+				-0.6
92,511	+				-0.0
92,608	+				-2.1
92,861	+		HMPREF1058_RS12505	0.20	-1.5
92,957	+		HMPREF1058_RS12505	0.27	+0.8
92,957	+		HMPREF1058_RS12505	0.27	-3.6
93,073	-		HMPREF1058_RS12505	0.35	-1.2
93,074	+		HMPREF1058_RS12505	0.35	-0.6
93,169	+		HMPREF1058_RS12505	0.41	-2.7
93,175	+		HMPREF1058_RS12505	0.42	-1.6
93,176	-				-1.1
93,284	+		HMPREF1058_RS12505	0.49	-1.5
93,414	+		HMPREF1058_RS12505	0.58	-1.2
93,431	+		HMPREF1058_RS12505	0.59	-1.4
93,453	-		HMPREF1058_RS12505	0.61	-0.8
93,560	-		HMPREF1058_RS12505	0.68	+0.1
93,646	+		HMPREF1058_RS12505	0.74	+0.5
93,646	+		HMPREF1058_RS12505	0.74	-0.4
93,647	-		HMPREF1058_RS12505	0.74	-1.3
93,775	+		HMPREF1058_RS12505	0.83	-0.9
93,792	-		HMPREF1058_RS12505	0.84	-0.6
94,029	+				+0.1
94,034	+				+0.1
94,040	-				-0.2
94,040	-				+0.1
94,077	-				+1.0
94,113	+		HMPREF1058_RS12500	0.11	-0.1
94,114	-		HMPREF1058_RS12500	0.11	-0.2
94,140	+		HMPREF1058_RS12500	0.15	-0.4
94,140	+		HMPREF1058_RS12500	0.15	-1.4
94,184	-		HMPREF1058_RS12500	0.22	+0.3
94,191	+		HMPREF1058_RS12500	0.23	-1.1
94,217	+		HMPREF1058_RS12500	0.27	+0.4
94,218	-		HMPREF1058_RS12500	0.27	+0.7
94,229	+		HMPREF1058_RS12500	0.28	-0.3
94,230	-		HMPREF1058_RS12500	0.29	-0.2
94,271	-		HMPREF1058_RS12500	0.35	-0.1
94,339	+		HMPREF1058_RS12500	0.45	-0.2
94,350	+		HMPREF1058_RS12500	0.47	+0.1
94,386	+		HMPREF1058_RS12500	0.52	-0.8
94,387	-		HMPREF1058_RS12500	0.53	-0.6
94,408	-		HMPREF1058_RS12500	0.56	+0.7
94,537	-		HMPREF1058_RS12500	0.75	-0.4
94,617	-		HMPREF1058_RS12500	0.88	-1.2
94,627	-		HMPREF1058_RS12500	0.89	-0.9
94,627	-		HMPREF1058_RS12500	0.89	-0.6
94,631	+		HMPREF1058_RS12500	0.90	+0.2
94,632	-		HMPREF1058_RS12500	0.90	+0.3
94,634	+				-0.5
94,754	+				+0.5
94,787	+		HMPREF1058_RS12495	0.14	+0.0
94,799	+				+0.8
94,799	+		HMPREF1058_RS12495	0.17	+0.1
94,799	+		HMPREF1058_RS12495	0.17	+0.4
94,799	+		HMPREF1058_RS12495	0.17	+0.3
94,804	+		HMPREF1058_RS12495	0.18	+1.3
94,856	+		HMPREF1058_RS12495	0.32	-0.1